Difference between revisions of "Specifications for a Community Annotation Form"

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Also, once PMID is entered, form pulls up Paper information, meaning title etc etc, similar to what P2GO does; Kimberly will talk to JC about it.
 
Also, once PMID is entered, form pulls up Paper information, meaning title etc etc, similar to what P2GO does; Kimberly will talk to JC about it.
 +
 +
Here is the information we got from Tony on how this feature works in Protein2GO:
 +
 +
>
 +
> We use the Europe PubMed Central web services for doing the lookup and
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> validation - you can find details of all their available services at
 +
> http://europepmc.org/RestfulWebService
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>
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> Here's an example of the kind of request that we make in order to do the
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> validation:
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>
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> www.ebi.ac.uk/europepmc/webservices/rest/search/format=json&query=src:med
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> AND
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> ext_id:16043488
  
 
==Mock-up of form with field titles and guidelines==
 
==Mock-up of form with field titles and guidelines==

Revision as of 15:11, 23 May 2013

Description of fields

1. Enter your first name.

Free text box; required

2. Enter your last name

Free text box; required

3. Enter a contact E-mail address

Free text box; required

4. Choose a species.

Autocomplete, Drop-down with predetermined values, if not found, free text is allowed. The preferred order is (note that Homo sapiens has been taken out):

  • Caenorhabditis elegans
  • Caenorhabditis briggsae
  • Pristionchus pacificus
  • Brugia malayi
  • Caenorhabditis brenneri
  • Caenorhabditis japonica
  • Caenorhabditis remanei
  • Caenorhabditis sp. 3
  • Panagrellus redivivus
  • Cruznema tripartitum


5. Choose a gene gin_locus gin_synonyms gin_seqname gin_wbgene this is the priority of how genes get autocompleted

J: If what is typed does not match, it stays as free-text

6.Write a concise description for the gene you've chosen.

Concise description: A big box for free-text, similar to the 'Description Text' box in the Concise Description OA.

7. Enter a published paper reference, either a PMID, WBPaper identifier or a DOI. Please note that WormBase will not accept meeting abstracts, Gazette articles or personal communications as references.

Free-text box allowing PMID or DOI.

Also, once PMID is entered, form pulls up Paper information, meaning title etc etc, similar to what P2GO does; Kimberly will talk to JC about it.

Here is the information we got from Tony on how this feature works in Protein2GO:

> > We use the Europe PubMed Central web services for doing the lookup and > validation - you can find details of all their available services at > http://europepmc.org/RestfulWebService > > Here's an example of the kind of request that we make in order to do the > validation: > > www.ebi.ac.uk/europepmc/webservices/rest/search/format=json&query=src:med > AND > ext_id:16043488

Mock-up of form with field titles and guidelines

1. Enter your first name. This field is required.


2. Enter your last name. This field is required.


3. Enter a contact E-mail address. This field is required.


4. Choose a species.

Start typing in a species, the form will autocomplete the text. If you cannot find the species in the drop-down, please enter it manually. This field is required.


5. Choose a gene

Enter a gene name (e.g., abc-1). Sequence names (e.g., AC3.4) and WBGene IDs (e.g., WBGene00000011) are allowed. If the WormBase gene you begin typing is present in the drop-down, the form will autocomplete the text. If you cannot find the gene in the drop-down, please enter it manually.


6. Write a concise description for the gene you've chosen.

Please see guidelines on writing a concise description: http://wiki.wormbase.org/index.php/How_WormBase_writes_a_concise_description


7. Enter a published paper reference, either a PMID, WBPaper identifier, or a DOI.

Please note that WormBase will not accept meeting abstracts, gazette articles or personal communications as references.