Difference between revisions of "Specifications for WB gpi file"
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http://wiki.geneontology.org/index.php/Final_GPAD_and_GPI_file_format#Final_format_.2809_Jan_2013.29_2 | http://wiki.geneontology.org/index.php/Final_GPAD_and_GPI_file_format#Final_format_.2809_Jan_2013.29_2 | ||
| + | |||
| + | {| cellspacing="2" border="1" | ||
| + | |- | ||
| + | ! column | ||
| + | ! name | ||
| + | ! required? | ||
| + | ! cardinality | ||
| + | ! GAF column | ||
| + | ! Example for UniProt | ||
| + | ! Example for WormBase | ||
| + | |||
| + | |- | ||
| + | | 01 || DB_Object_ID || required || 1 || 2/17 || Q4VCS5-1 || WBGene00000035 | ||
| + | |- | ||
| + | | 02 || DB_Object_Symbol || required || 1 || 3 || AMOT || ace-1 | ||
| + | |- | ||
| + | | 03 || DB_Object_Name || optional || 0 or 1 || 10 || Angiomotin || | ||
| + | |- | ||
| + | | 04 || DB_Object_Synonym(s) || optional || 0 or greater || 11 || AMOT_HUMAN|KIAA1071|AMOT || ACE1 | ||
| + | |- | ||
| + | | 05 || DB_Object_Type || required || 1 || 12 || protein || gene | ||
| + | |- | ||
| + | | 06 || Taxon || required || 1 || 13 || taxon:9606 || taxon:6239 | ||
| + | |- | ||
| + | | 07 || Parent_Object_ID || optional || 0 or 1 || - || UniProtKB:Q4VCS5 || WB:WBGene00000035 | ||
| + | |- | ||
| + | | 08 || DB_Xref(s) || optional || 0 or greater || - || - || UniProtKB:P38433 | ||
| + | |- | ||
| + | | 09 || Gene_Product_Properties || optional || 0 or greater || - || See Note 4 below || | ||
| + | |- | ||
| + | |} | ||
Revision as of 18:22, 20 March 2013
These specifications are based on the documentation on the GO wiki:
| column | name | required? | cardinality | GAF column | Example for UniProt | Example for WormBase |
|---|---|---|---|---|---|---|
| 01 | DB_Object_ID | required | 1 | 2/17 | Q4VCS5-1 | WBGene00000035 |
| 02 | DB_Object_Symbol | required | 1 | 3 | AMOT | ace-1 |
| 03 | DB_Object_Name | optional | 0 or 1 | 10 | Angiomotin | |
| 04 | DB_Object_Synonym(s) | optional | 0 or greater | 11 | KIAA1071|AMOT | ACE1 |
| 05 | DB_Object_Type | required | 1 | 12 | protein | gene |
| 06 | Taxon | required | 1 | 13 | taxon:9606 | taxon:6239 |
| 07 | Parent_Object_ID | optional | 0 or 1 | - | UniProtKB:Q4VCS5 | WB:WBGene00000035 |
| 08 | DB_Xref(s) | optional | 0 or greater | - | - | UniProtKB:P38433 |
| 09 | Gene_Product_Properties | optional | 0 or greater | - | See Note 4 below |
