Difference between revisions of "Species available through WormBase (overview)"
From WormBaseWiki
Jump to navigationJump to search| Line 30: | Line 30: | ||
|[[Caenorhabditis brenneri|''Caenorhabditis brenneri'']] | |[[Caenorhabditis brenneri|''Caenorhabditis brenneri'']] | ||
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| − | | | + | | genomic, proteins |
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| Line 57: | Line 57: | ||
|[[Caenorhabditis remanei|''Caenorhabditis remanei'']] | |[[Caenorhabditis remanei|''Caenorhabditis remanei'']] | ||
| [http://www.wormbase.org/db/seq/gbrowse/c_remanei]<br> - includes nGASP predictions | | [http://www.wormbase.org/db/seq/gbrowse/c_remanei]<br> - includes nGASP predictions | ||
| − | | genomic | + | | genomic, proteins |
| − | | | + | | |
| [http://www.wormbase.org/db/gene/gene?name=WBGene00063512 Gene Summary] | | [http://www.wormbase.org/db/gene/gene?name=WBGene00063512 Gene Summary] | ||
| [http://www.wormbase.org/db/seq/sequence?name=CRE02979;class=Gene_name Sequence Summary] <br> -error probably with inline image | | [http://www.wormbase.org/db/seq/sequence?name=CRE02979;class=Gene_name Sequence Summary] <br> -error probably with inline image | ||
| Line 75: | Line 75: | ||
| [[Meloidogyne hapla|''Meloidogyne hapla'']] | | [[Meloidogyne hapla|''Meloidogyne hapla'']] | ||
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| − | | | + | | genomic |
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| Line 93: | Line 93: | ||
|[[Pristionchus pacificus|''Pristionchus pacificus'']] | |[[Pristionchus pacificus|''Pristionchus pacificus'']] | ||
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| − | | | + | | genomic, proteins |
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Revision as of 12:18, 5 January 2010
| Species | Genome Browser |
BLAST | BLAT | Genes | Sequences | Proteins | Orthology |
| Brugia malayi | yes -missing name data for gene models -gene page available for brigpep, remaneiX, and wormpep protein match features |
BLAST Search genomic, proteins |
|||||
| Caenorhabditis elegans | yes | BLAST Search genes, proteins, ests, genomic |
BLAT Search | Gene Summary | Sequence Summary | Protein Summary | |
| Caenorhabditis brenneri | genomic, proteins | ||||||
| Caenorhabditis briggsae | Yes - includes nGASP predictions | genes, proteins, ests, genomic | genomic | ||||
| Caenorhabditis japonica | yes - includes nGASP predictions - bug: when click 'update image' all toggle buttons disappear, this happens with other species too |
genomic | Gene Summary | Sequence Summary | Protein Summary | ||
| Caenorhabditis remanei | [1] - includes nGASP predictions |
genomic, proteins | Gene Summary | Sequence Summary -error probably with inline image |
Protein Summary | ||
| Haemonchus contortus | |||||||
| Meloidogyne hapla | genomic | ||||||
| Meloidogyne incognita | |||||||
| Pristionchus pacificus | genomic, proteins | ||||||
