Difference between revisions of "Species available through WormBase (overview)"
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+ | = This page is outdated and has been replaced by [[WormBase_Genomes|'''WormBase_Genomes''']] = | ||
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{| width="100%" cellspacing="1" cellpadding="1" border="1" | {| width="100%" cellspacing="1" cellpadding="1" border="1" | ||
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|[[Brugia malayi|''Brugia malayi'']] | |[[Brugia malayi|''Brugia malayi'']] | ||
− | |[http://www.wormbase.org/db/seq/gbrowse/c_elegans yes]<br> -missing name data for gene models<br> -gene page available for brigpep protein match features<br> | + | |[http://www.wormbase.org/db/seq/gbrowse/c_elegans yes]<br> -missing name data for gene models<br> -gene page available for brigpep, remaneiX, and wormpep protein match features<br> |
− | | | + | |[http://www.wormbase.org/db/searches/blast_blat BLAST Search]<br>genomic, proteins |
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|[http://www.wormbase.org/db/seq/gbrowse/c_elegans yes] | |[http://www.wormbase.org/db/seq/gbrowse/c_elegans yes] | ||
|[http://www.wormbase.org/db/searches/blast_blat BLAST Search]<br>genes, proteins, ests, genomic | |[http://www.wormbase.org/db/searches/blast_blat BLAST Search]<br>genes, proteins, ests, genomic | ||
− | |[http://www.wormbase.org/db/searches/blast_blat BLAT Search] | + | |[http://www.wormbase.org/db/searches/blast_blat BLAT Search] <br> genomic |
|[http://www.wormbase.org/db/gene/gene?name=WBGene00006763 Gene Summary] | |[http://www.wormbase.org/db/gene/gene?name=WBGene00006763 Gene Summary] | ||
|[http://www.wormbase.org/db/seq/sequence Sequence Summary] | |[http://www.wormbase.org/db/seq/sequence Sequence Summary] | ||
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|[[Caenorhabditis brenneri|''Caenorhabditis brenneri'']] | |[[Caenorhabditis brenneri|''Caenorhabditis brenneri'']] | ||
+ | | [http://dev.wormbase.org/db/gb2/gbrowse/c_brenneri/?name=id:15405687;dbid=c_brenneri:database yes] | ||
+ | | genomic, proteins | ||
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− | | | + | | [http://dev.wormbase.org/db/gene/gene?name=WBGene00139904;class=Gene Gene Summary] |
− | | | + | | [http://dev.wormbase.org/db/seq/sequence?name=CBN01179;class=Gene_name Sequence Summary] |
− | | | + | | [http://dev.wormbase.org/db/seq/protein?name=CN%3ACN30358;class=Protein Protein Summary] |
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|[[Caenorhabditis briggsae|''Caenorhabditis briggsae'']] | |[[Caenorhabditis briggsae|''Caenorhabditis briggsae'']] | ||
− | |Yes - includes nGASP predictions | + | | [http://dev.wormbase.org/db/gb2/gbrowse/c_briggsae/?name=chrI%3A80000..120000 Yes ] <br> - includes nGASP predictions |
|genes, proteins, ests, genomic | |genes, proteins, ests, genomic | ||
|genomic | |genomic | ||
− | | | + | | [http://dev.wormbase.org/db/gene/gene?name=WBGene00032896;class=Gene Gene Summary] |
− | | | + | | [http://dev.wormbase.org/db/seq/sequence?name=CBG11849;class=Gene_name Sequence Summary] |
− | | | + | | [http://dev.wormbase.org/db/seq/protein?name=BP%3ACBP30968;class=Protein Protein Summary] |
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|[[Caenorhabditis japonica|''Caenorhabditis japonica'']] | |[[Caenorhabditis japonica|''Caenorhabditis japonica'']] | ||
+ | | [http://dev.wormbase.org/db/gb2/gbrowse/c_japonica yes] <br>- includes nGASP predictions | ||
+ | | genomic | ||
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− | | | + | | [http://dev.wormbase.org/db/gene/gene?name=WBGene00134647 Gene Summary] |
− | | | + | | [http://dev.wormbase.org/db/seq/sequence?name=CJA15443;class=Gene_name Sequence Summary] |
− | | | + | | [http://dev.wormbase.org/db/seq/protein?name=JA%3AJA24090;class=Protein Protein Summary] |
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|[[Caenorhabditis remanei|''Caenorhabditis remanei'']] | |[[Caenorhabditis remanei|''Caenorhabditis remanei'']] | ||
+ | | [http://dev.wormbase.org/db/gb2/gbrowse/c_remanei yes]<br> - includes nGASP predictions | ||
+ | | genomic, proteins | ||
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− | | | + | | [http://dev.wormbase.org/db/gene/gene?name=WBGene00063512 Gene Summary] |
− | | | + | | [http://dev.wormbase.org/db/seq/sequence?name=CRE02979;class=Gene_name Sequence Summary] |
− | | | + | | [http://dev.wormbase.org/db/seq/protein?name=CRE02979;class=CDS Protein Summary] |
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| [[Haemonchus contortus|''Haemonchus contortus'']] | | [[Haemonchus contortus|''Haemonchus contortus'']] | ||
+ | | [http://dev.wormbase.org/db/gb2/gbrowse/h_contortus yes] | ||
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− | | | + | | [http://dev.wormbase.org/db/gb2/gbrowse_details/h_contortus?ref=Hcon_Contig0059704;start=71910;end=72820;name=HCON02057;class=Sequence;feature_id=6;db_id=h_contortus%3Adatabase gbrowse_details] |
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| [[Meloidogyne hapla|''Meloidogyne hapla'']] | | [[Meloidogyne hapla|''Meloidogyne hapla'']] | ||
+ | | [http://dev.wormbase.org/db/gb2/gbrowse/m_hapla/?name=MhA1_Contig0 yes] | ||
+ | | genomic | ||
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− | | | + | | [http://dev.wormbase.org/db/gb2/gbrowse_details/m_hapla?ref=MhA1_Contig0;start=119362;end=123927;name=MhA1_Contig0.frz3.gene59;class=Sequence;feature_id=1904734;db_id=m_hapla%3Adatabase gbrowse_details] |
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| [[Meloidogyne incognita|''Meloidogyne incognita'']] | | [[Meloidogyne incognita|''Meloidogyne incognita'']] | ||
+ | | [http://dev.wormbase.org/db/gb2/gbrowse/m_incognita/ Yes] <br> - no Gene Models track | ||
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|[[Pristionchus pacificus|''Pristionchus pacificus'']] | |[[Pristionchus pacificus|''Pristionchus pacificus'']] | ||
+ | | [http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/?name=id:2;dbid=p_pacificus:database yes] | ||
+ | | genomic, proteins | ||
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− | | | + | | [http://dev.wormbase.org/db/gene/gene?name=WBGene00089558;class=Gene Gene Summary] |
− | | | + | | [http://dev.wormbase.org/db/seq/sequence?name=PPA00004;class=Gene_name Sequence Summary] |
− | | | + | | [http://dev.wormbase.org/db/seq/protein?name=PP%3APP22240;class=Protein Protein Summary] |
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|} | |} | ||
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+ | *[[Caenorhabditis elegans|''Caenorhabditis elegans'']] | ||
+ | **[http://en.wikipedia.org/wiki/Caenorhabditis_elegans Wikipedia entry on ''C. elegans''] | ||
+ | ** [[About elegans|''About C. elegans'']] | ||
+ | **[[Key publications|Key publications]] | ||
+ | **[[Nomenclature|Genetic Nomenclature]] | ||
+ | **[[Other nematodes|Other nematodes]] | ||
+ | **[[Nematode sequencing summary|Nematode resequencing and diversity]] | ||
+ | **[[Partslist|The C. elegans Parts List (List of Cells)]] | ||
+ | *[[Possible_assembly_errors]] - in all Caenorhabditis species | ||
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+ | [[Category:User Guide]] |
Latest revision as of 08:30, 27 September 2010
This page is outdated and has been replaced by WormBase_Genomes