Difference between revisions of "Species available through WormBase (overview)"

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= This page is outdated and has been replaced by [[WormBase_Genomes|'''WormBase_Genomes''']] =
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|[[Caenorhabditis briggsae|''Caenorhabditis briggsae'']]
 
|[[Caenorhabditis briggsae|''Caenorhabditis briggsae'']]
|Yes - includes nGASP predictions
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| [http://dev.wormbase.org/db/gb2/gbrowse/c_briggsae/?name=chrI%3A80000..120000 Yes ] <br> - includes nGASP predictions
 
|genes, proteins, ests, genomic  
 
|genes, proteins, ests, genomic  
 
|genomic
 
|genomic
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| [http://dev.wormbase.org/db/gene/gene?name=WBGene00032896;class=Gene Gene Summary]
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| [http://dev.wormbase.org/db/seq/sequence?name=CBG11849;class=Gene_name Sequence Summary]
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| [http://dev.wormbase.org/db/seq/protein?name=BP%3ACBP30968;class=Protein Protein Summary]
 
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| [[Meloidogyne incognita|''Meloidogyne incognita'']]
 
| [[Meloidogyne incognita|''Meloidogyne incognita'']]
| [http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/?name=id:2;dbid=p_pacificus:database yes]
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| [http://dev.wormbase.org/db/gb2/gbrowse/m_incognita/ Yes] <br> - no Gene Models track
 
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|[[Pristionchus pacificus|''Pristionchus pacificus'']]
 
|[[Pristionchus pacificus|''Pristionchus pacificus'']]
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| [http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/?name=id:2;dbid=p_pacificus:database yes]
 
| genomic, proteins
 
| genomic, proteins
 
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*[[Caenorhabditis elegans|''Caenorhabditis elegans'']]
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**[http://en.wikipedia.org/wiki/Caenorhabditis_elegans Wikipedia entry on ''C. elegans'']
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** [[About elegans|''About C. elegans'']]
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**[[Key publications|Key publications]]
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**[[Nomenclature|Genetic Nomenclature]]
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**[[Other nematodes|Other nematodes]]
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**[[Nematode sequencing summary|Nematode resequencing and diversity]]
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**[[Partslist|The C. elegans Parts List (List of Cells)]]
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*[[Possible_assembly_errors]] - in all Caenorhabditis species
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[[Category:User Guide]]

Latest revision as of 08:30, 27 September 2010

This page is outdated and has been replaced by WormBase_Genomes







Species Genome
Browser
BLAST BLAT Genes Sequences Proteins Orthology
Brugia malayi yes
-missing name data for gene models
-gene page available for brigpep, remaneiX, and wormpep protein match features
BLAST Search
genomic, proteins
Caenorhabditis elegans yes BLAST Search
genes, proteins, ests, genomic
BLAT Search
genomic
Gene Summary Sequence Summary Protein Summary
Caenorhabditis brenneri yes genomic, proteins Gene Summary Sequence Summary Protein Summary
Caenorhabditis briggsae Yes
- includes nGASP predictions
genes, proteins, ests, genomic genomic Gene Summary Sequence Summary Protein Summary
Caenorhabditis japonica yes
- includes nGASP predictions
genomic Gene Summary Sequence Summary Protein Summary
Caenorhabditis remanei yes
- includes nGASP predictions
genomic, proteins Gene Summary Sequence Summary Protein Summary
Haemonchus contortus yes gbrowse_details
Meloidogyne hapla yes genomic gbrowse_details
Meloidogyne incognita Yes
- no Gene Models track
Pristionchus pacificus yes genomic, proteins Gene Summary Sequence Summary Protein Summary