Difference between revisions of "Species available through WormBase (overview)"

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= This page is outdated and has been replaced by [[WormBase_Genomes|'''WormBase_Genomes''']] =
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{| width="100%" cellspacing="1" cellpadding="1" border="1"
 
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|[http://www.wormbase.org/db/seq/gbrowse/c_elegans yes]
 
|[http://www.wormbase.org/db/seq/gbrowse/c_elegans yes]
 
|[http://www.wormbase.org/db/searches/blast_blat BLAST Search]<br>genes, proteins, ests, genomic
 
|[http://www.wormbase.org/db/searches/blast_blat BLAST Search]<br>genes, proteins, ests, genomic
|[http://www.wormbase.org/db/searches/blast_blat BLAT Search]
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|[http://www.wormbase.org/db/searches/blast_blat BLAT Search] <br> genomic
 
|[http://www.wormbase.org/db/gene/gene?name=WBGene00006763 Gene Summary]
 
|[http://www.wormbase.org/db/gene/gene?name=WBGene00006763 Gene Summary]
 
|[http://www.wormbase.org/db/seq/sequence Sequence Summary]
 
|[http://www.wormbase.org/db/seq/sequence Sequence Summary]
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|[[Caenorhabditis brenneri|''Caenorhabditis brenneri'']]
 
|[[Caenorhabditis brenneri|''Caenorhabditis brenneri'']]
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| [http://dev.wormbase.org/db/gb2/gbrowse/c_brenneri/?name=id:15405687;dbid=c_brenneri:database yes]
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| genomic, proteins
 
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|  
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| [http://dev.wormbase.org/db/gene/gene?name=WBGene00139904;class=Gene Gene Summary]
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| [http://dev.wormbase.org/db/seq/sequence?name=CBN01179;class=Gene_name Sequence Summary]
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| [http://dev.wormbase.org/db/seq/protein?name=CN%3ACN30358;class=Protein Protein Summary]
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|[[Caenorhabditis briggsae|''Caenorhabditis briggsae'']]
 
|[[Caenorhabditis briggsae|''Caenorhabditis briggsae'']]
|Yes - includes nGASP predictions
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| [http://dev.wormbase.org/db/gb2/gbrowse/c_briggsae/?name=chrI%3A80000..120000 Yes ] <br> - includes nGASP predictions
 
|genes, proteins, ests, genomic  
 
|genes, proteins, ests, genomic  
 
|genomic
 
|genomic
|  
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| [http://dev.wormbase.org/db/gene/gene?name=WBGene00032896;class=Gene Gene Summary]
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| [http://dev.wormbase.org/db/seq/sequence?name=CBG11849;class=Gene_name Sequence Summary]
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| [http://dev.wormbase.org/db/seq/protein?name=BP%3ACBP30968;class=Protein Protein Summary]
 
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|-
 
|-
 
|[[Caenorhabditis japonica|''Caenorhabditis japonica'']]
 
|[[Caenorhabditis japonica|''Caenorhabditis japonica'']]
| [http://www.wormbase.org/db/seq/gbrowse/c_japonica yes] -when click' update image' all toggle button disappear
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| [http://dev.wormbase.org/db/gb2/gbrowse/c_japonica yes] <br>- includes nGASP predictions 
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| genomic
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|  
 
 
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| [http://dev.wormbase.org/db/gene/gene?name=WBGene00134647 Gene Summary]
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| [http://dev.wormbase.org/db/seq/sequence?name=CJA15443;class=Gene_name Sequence Summary]
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| [http://dev.wormbase.org/db/seq/protein?name=JA%3AJA24090;class=Protein Protein Summary]
 
|  
 
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|[[Caenorhabditis remanei|''Caenorhabditis remanei'']]  
 
|[[Caenorhabditis remanei|''Caenorhabditis remanei'']]  
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| [http://dev.wormbase.org/db/gb2/gbrowse/c_remanei yes]<br> - includes nGASP predictions
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| genomic, proteins
 
|  
 
|  
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| [http://dev.wormbase.org/db/gene/gene?name=WBGene00063512 Gene Summary]
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| [http://dev.wormbase.org/db/seq/sequence?name=CRE02979;class=Gene_name Sequence Summary] 
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| [http://dev.wormbase.org/db/seq/protein?name=CRE02979;class=CDS Protein Summary]
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| [[Haemonchus contortus|''Haemonchus contortus'']]
 
| [[Haemonchus contortus|''Haemonchus contortus'']]
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| [http://dev.wormbase.org/db/gb2/gbrowse/h_contortus yes]
 
|  
 
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|  
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| [http://dev.wormbase.org/db/gb2/gbrowse_details/h_contortus?ref=Hcon_Contig0059704;start=71910;end=72820;name=HCON02057;class=Sequence;feature_id=6;db_id=h_contortus%3Adatabase gbrowse_details]
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| [[Meloidogyne hapla|''Meloidogyne hapla'']]
 
| [[Meloidogyne hapla|''Meloidogyne hapla'']]
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| [http://dev.wormbase.org/db/gb2/gbrowse/m_hapla/?name=MhA1_Contig0 yes]
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| genomic
 
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|  
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| [http://dev.wormbase.org/db/gb2/gbrowse_details/m_hapla?ref=MhA1_Contig0;start=119362;end=123927;name=MhA1_Contig0.frz3.gene59;class=Sequence;feature_id=1904734;db_id=m_hapla%3Adatabase gbrowse_details]
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| [[Meloidogyne incognita|''Meloidogyne incognita'']]
 
| [[Meloidogyne incognita|''Meloidogyne incognita'']]
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| [http://dev.wormbase.org/db/gb2/gbrowse/m_incognita/ Yes] <br> - no Gene Models track
 
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|[[Pristionchus pacificus|''Pristionchus pacificus'']]
 
|[[Pristionchus pacificus|''Pristionchus pacificus'']]
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| [http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/?name=id:2;dbid=p_pacificus:database yes]
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| genomic, proteins
 
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|  
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| [http://dev.wormbase.org/db/gene/gene?name=WBGene00089558;class=Gene Gene Summary]
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| [http://dev.wormbase.org/db/seq/sequence?name=PPA00004;class=Gene_name Sequence Summary]
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| [http://dev.wormbase.org/db/seq/protein?name=PP%3APP22240;class=Protein Protein Summary]
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*[[Caenorhabditis elegans|''Caenorhabditis elegans'']]
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**[http://en.wikipedia.org/wiki/Caenorhabditis_elegans Wikipedia entry on ''C. elegans'']
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** [[About elegans|''About C. elegans'']]
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**[[Key publications|Key publications]]
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**[[Nomenclature|Genetic Nomenclature]]
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**[[Other nematodes|Other nematodes]]
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**[[Nematode sequencing summary|Nematode resequencing and diversity]]
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**[[Partslist|The C. elegans Parts List (List of Cells)]]
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*[[Possible_assembly_errors]] - in all Caenorhabditis species
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[[Category:User Guide]]

Latest revision as of 08:30, 27 September 2010

This page is outdated and has been replaced by WormBase_Genomes







Species Genome
Browser
BLAST BLAT Genes Sequences Proteins Orthology
Brugia malayi yes
-missing name data for gene models
-gene page available for brigpep, remaneiX, and wormpep protein match features
BLAST Search
genomic, proteins
Caenorhabditis elegans yes BLAST Search
genes, proteins, ests, genomic
BLAT Search
genomic
Gene Summary Sequence Summary Protein Summary
Caenorhabditis brenneri yes genomic, proteins Gene Summary Sequence Summary Protein Summary
Caenorhabditis briggsae Yes
- includes nGASP predictions
genes, proteins, ests, genomic genomic Gene Summary Sequence Summary Protein Summary
Caenorhabditis japonica yes
- includes nGASP predictions
genomic Gene Summary Sequence Summary Protein Summary
Caenorhabditis remanei yes
- includes nGASP predictions
genomic, proteins Gene Summary Sequence Summary Protein Summary
Haemonchus contortus yes gbrowse_details
Meloidogyne hapla yes genomic gbrowse_details
Meloidogyne incognita Yes
- no Gene Models track
Pristionchus pacificus yes genomic, proteins Gene Summary Sequence Summary Protein Summary