Difference between revisions of "Species available through WormBase (overview)"

Revision as of 14:45, 6 January 2010

Species	Genome Browser	BLAST	BLAT	Genes	Sequences	Proteins	Orthology
Brugia malayi	yes -missing name data for gene models -gene page available for brigpep, remaneiX, and wormpep protein match features	BLAST Search genomic, proteins
Caenorhabditis elegans	yes	BLAST Search genes, proteins, ests, genomic	BLAT Search	Gene Summary	Sequence Summary	Protein Summary
Caenorhabditis brenneri		genomic, proteins
Caenorhabditis briggsae	Yes - includes nGASP predictions	genes, proteins, ests, genomic	genomic
Caenorhabditis japonica	yes - includes nGASP predictions	genomic		Gene Summary	Sequence Summary	Protein Summary
Caenorhabditis remanei	yes - includes nGASP predictions	genomic, proteins		Gene Summary	Sequence Summary	Protein Summary
Haemonchus contortus	yes			only through gbrowse_details
Meloidogyne hapla	yes	genomic
Meloidogyne incognita
Pristionchus pacificus		genomic, proteins

@@ Line 49: / Line 49: @@
 | [http://dev.wormbase.org/db/gb2/gbrowse/c_japonica yes] <br>- includes nGASP predictions
 | genomic
-| none
+|
 | [http://dev.wormbase.org/db/gene/gene?name=WBGene00134647 Gene Summary]
 | [http://dev.wormbase.org/db/seq/sequence?name=CJA15443;class=Gene_name Sequence Summary]
@@ Line 58: / Line 58: @@
 | [http://dev.wormbase.org/db/gb2/gbrowse/c_remanei yes]<br> - includes nGASP predictions
 | genomic, proteins
-| none
+|
 | [http://dev.wormbase.org/db/gene/gene?name=WBGene00063512 Gene Summary]
 | [http://dev.wormbase.org/db/seq/sequence?name=CRE02979;class=Gene_name Sequence Summary]
@@ Line 66: / Line 66: @@
 | [[Haemonchus contortus|''Haemonchus contortus'']]
 | [http://dev.wormbase.org/db/gb2/gbrowse/h_contortus yes]
-| none
+|
-| none
+|
 | [http://dev.wormbase.org/db/gb2/gbrowse_details/h_contortus?ref=Hcon_Contig0059704;start=71910;end=72820;name=HCON02057;class=Sequence;feature_id=6;db_id=h_contortus%3Adatabase only through gbrowse_details]
 |