Difference between revisions of "Species available through WormBase (overview)"
From WormBaseWiki
Jump to navigationJump to search| Line 49: | Line 49: | ||
| [http://dev.wormbase.org/db/gb2/gbrowse/c_japonica yes] <br>- includes nGASP predictions | | [http://dev.wormbase.org/db/gb2/gbrowse/c_japonica yes] <br>- includes nGASP predictions | ||
| genomic | | genomic | ||
| − | | | + | | none |
| [http://dev.wormbase.org/db/gene/gene?name=WBGene00134647 Gene Summary] | | [http://dev.wormbase.org/db/gene/gene?name=WBGene00134647 Gene Summary] | ||
| [http://dev.wormbase.org/db/seq/sequence?name=CJA15443;class=Gene_name Sequence Summary] | | [http://dev.wormbase.org/db/seq/sequence?name=CJA15443;class=Gene_name Sequence Summary] | ||
| Line 58: | Line 58: | ||
| [http://dev.wormbase.org/db/gb2/gbrowse/c_remanei yes]<br> - includes nGASP predictions | | [http://dev.wormbase.org/db/gb2/gbrowse/c_remanei yes]<br> - includes nGASP predictions | ||
| genomic, proteins | | genomic, proteins | ||
| − | | | + | | none |
| [http://dev.wormbase.org/db/gene/gene?name=WBGene00063512 Gene Summary] | | [http://dev.wormbase.org/db/gene/gene?name=WBGene00063512 Gene Summary] | ||
| − | | [http://dev.wormbase.org/db/seq/sequence?name=CRE02979;class=Gene_name Sequence Summary] | + | | [http://dev.wormbase.org/db/seq/sequence?name=CRE02979;class=Gene_name Sequence Summary] |
| [http://dev.wormbase.org/db/seq/protein?name=CRE02979;class=CDS Protein Summary] | | [http://dev.wormbase.org/db/seq/protein?name=CRE02979;class=CDS Protein Summary] | ||
| | | | ||
|- | |- | ||
| [[Haemonchus contortus|''Haemonchus contortus'']] | | [[Haemonchus contortus|''Haemonchus contortus'']] | ||
| − | | | + | | [http://dev.wormbase.org/db/gb2/gbrowse/h_contortus yes] |
| − | | | + | | none |
| − | | | + | | none |
| − | | | + | | [http://dev.wormbase.org/db/gb2/gbrowse_details/h_contortus?ref=Hcon_Contig0059704;start=71910;end=72820;name=HCON02057;class=Sequence;feature_id=6;db_id=h_contortus%3Adatabase only through gbrowse_details] |
| | | | ||
| | | | ||
Revision as of 13:14, 5 January 2010
| Species | Genome Browser |
BLAST | BLAT | Genes | Sequences | Proteins | Orthology |
| Brugia malayi | yes -missing name data for gene models -gene page available for brigpep, remaneiX, and wormpep protein match features |
BLAST Search genomic, proteins |
|||||
| Caenorhabditis elegans | yes | BLAST Search genes, proteins, ests, genomic |
BLAT Search | Gene Summary | Sequence Summary | Protein Summary | |
| Caenorhabditis brenneri | genomic, proteins | ||||||
| Caenorhabditis briggsae | Yes - includes nGASP predictions | genes, proteins, ests, genomic | genomic | ||||
| Caenorhabditis japonica | yes - includes nGASP predictions |
genomic | none | Gene Summary | Sequence Summary | Protein Summary | |
| Caenorhabditis remanei | yes - includes nGASP predictions |
genomic, proteins | none | Gene Summary | Sequence Summary | Protein Summary | |
| Haemonchus contortus | yes | none | none | only through gbrowse_details | |||
| Meloidogyne hapla | genomic | ||||||
| Meloidogyne incognita | |||||||
| Pristionchus pacificus | genomic, proteins | ||||||
