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  • -rwxrwxr-x 1 todd wormbase 20053 Jul 6 14:06 cell.cgi -rwxrwxr-x 1 todd wormbase 3916 Jul 6 14:06 make_pedigree.cgi
    16 KB (1,576 words) - 17:44, 16 August 2010
  • PLEASE NOTE THAT AS OF 2009.09, THIS DOCUMENTATION IS DEPRECATED. Should you wish to install WormBase locally, please see:
    60 KB (9,496 words) - 23:06, 13 August 2010
  • ...l traits such as gene expression patterns and neuronal connectivity. Also, WormBase contains sequence and gene structures of C. briggsae and C. remanei, two cl ...so far. All of the information in this chapter is based on the version of WormBase available in September, 2005 (WS147 release; BioPerl/Generic Model Organism
    103 KB (16,375 words) - 23:39, 30 November 2010
  • The WormBase development server at OICR is a virtual server with the following stats: All WormBase components are collected under a single directory: /usr/local/wormbase
    28 KB (3,960 words) - 17:57, 16 August 2010
  • ...ww.wormbase.org/about/Frequently_asked_questions FAQ pages] on the new www.wormbase.org site. === How should I cite WormBase? ===
    67 KB (10,954 words) - 09:22, 19 February 2013
  • ...e) the directions below may be slightly out-of-sync with how the principal WormBase architecture is built. ...2, the suggested minimum hardware requirements for a basic installation of WormBase are:''
    26 KB (3,522 words) - 19:10, 18 June 2014
  • The WormBase production environment consists of a series of partially redundant web and ...e root directory. It's configuration and init files are maintained in the wormbase-admin module.
    32 KB (4,370 words) - 20:48, 18 June 2014
  • ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status. |[[WormBase Model:2_point_data|2_point_data]]
    12 KB (1,559 words) - 18:14, 15 June 2011
  • ...ist of the most prominent classes in use in the AceDB database employed by WormBase. To display the current model of any class, include the following text in your documentation:
    4 KB (568 words) - 11:06, 23 May 2011
  • GBrowse is one of the central -- and most heavily used -- components of the WormBase site. To meet this demand, we use a number of dedicated servers using GBro 2. $app_root/$app/wormbase.env sets the GBROWSE_CONF and GBROWSE_HTDOCS environment variables.
    20 KB (2,916 words) - 15:25, 4 August 2016
  • WormBase is updated with each new build of the database released from Sanger. The li brie3> cd /usr/local/wormbase-production
    34 KB (5,450 words) - 18:24, 17 August 2010
  • ...y </nowiki>''C. elegans'' gene in the published literature can be found in WormBase, by reference either to genes or to cell or tissue types. There are results ...elopers group actively invites suggestions for improvement from users, and WormBase's source code is freely available for local installation and improvement.
    30 KB (4,765 words) - 20:03, 11 August 2010
  • The following documentation explains the use and backend for the Phenotype form found here: https://wormbase.org//submissions/phenotype.cgi
    26 KB (4,016 words) - 21:32, 8 April 2020
  • ...chines" (or VMX) are self-contained packages of everything you need to use WormBase locally ...ents. First, you will need the primary virtual machine, which contains the WormBase software, within a Linux operating system.
    11 KB (1,664 words) - 18:43, 17 August 2010
  • '''THIS DOCUMENT IS NOW DEPRECATED. PLEASE REFER TO THE PROJECT DOCUMENTATION MAINTAINED ON GOOGLE DRIVE.''' https://docs.google.com/a/wormbase.org/document/d/1oPpj8d5gibUc-gpUZorl6ETT5baE6mp-v2bMedKauiA/edit#
    25 KB (3,632 words) - 03:11, 28 October 2013
  • ...a of the model nematode ''Caenorhabditis elegans'' and related nematodes. WormBase is developed by an international consortium of researchers and computer sci *[[UserGuide:General_Description|Overview of WormBase]]
    4 KB (613 words) - 09:23, 30 June 2011
  • == The C. briggsae genome in WormBase == ...genome (Stein et.al, PloS Biology, 2003) has been fully incorporated into WormBase. The C. briggsae genome can be viewed by itself or in synteny with the C. e
    6 KB (914 words) - 15:39, 24 September 2007
  • ...rimary front end caching server (web-web1.wormbase.org/fe.wormbase.org) at WormBase. This server runs the Squid Reverse Proxy server. = Checkout the wormbase-admin module =
    20 KB (2,994 words) - 16:05, 23 August 2010
  • [[Caltech documentation]] <br> ...ta from the literature and individual laboratories and display them in the WormBase gene expression page.
    120 KB (19,677 words) - 14:18, 28 September 2018
  • WormBase frozen releases are hosted on the virtualized server: All WormBase-specific files are maintained in a shared directory.
    8 KB (1,087 words) - 17:35, 19 June 2014

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