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  • Should you wish to install WormBase locally, please see: http://www.wormbase.org/wiki/index.php/WormBase_Development_Environment
    60 KB (9,496 words) - 23:06, 13 August 2010
  • The WormBase production environment consists of a series of partially redundant web and ...e root directory. It's configuration and init files are maintained in the wormbase-admin module.
    32 KB (4,370 words) - 20:48, 18 June 2014
  • ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status. |[[WormBase Model:2_point_data|2_point_data]]
    12 KB (1,559 words) - 18:14, 15 June 2011
  • GBrowse is one of the central -- and most heavily used -- components of the WormBase site. To meet this demand, we use a number of dedicated servers using GBro 2. $app_root/$app/wormbase.env sets the GBROWSE_CONF and GBROWSE_HTDOCS environment variables.
    20 KB (2,916 words) - 15:25, 4 August 2016
  • ...le/archive here] for an archive of outdated/obsolete information about the WormBase gene association file. To view the (now deprecated) GAF 2.0 format specification, visit:
    12 KB (1,718 words) - 17:45, 5 February 2021
  • ===WormBase Uploads=== ...produced weekly to the WormBase .ace file for upload: [[UniProtKB gpad to WormBase .ace]]
    30 KB (3,904 words) - 18:45, 13 May 2020
  • -rw-rw-rw- wormbase.conf ...(henceforth "the web application") and a series of external models in the WormBase::API namespace.
    10 KB (1,357 words) - 14:03, 19 June 2014
  • Title: WormBase 2019 - Data, Tools and Community Curation ...mBase community annotation forms and how to use them to contribute data to WormBase. We will also present updates to ParaSite, a portal for parasitic worm gen
    9 KB (1,364 words) - 15:39, 7 February 2019
  • WormMart is WormBase's implementation of the [http://www,biomart.org BioMart] data warehouse. sudo addgroup wormbase
    8 KB (1,307 words) - 14:39, 4 November 2010
  • http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=log ...ng the format Exprnnnn where n is a number; these values correspond to the WormBase ID of the Expr_pattern object; individual entries are comma-separated.
    47 KB (6,852 words) - 04:27, 8 December 2020
  • ...information about the WormBase gene association file. Click [https://wiki.wormbase.org/index.php/WormBase_gene_association_file here] for the page with curren ====Generating the WormBase gene association file====
    4 KB (629 words) - 18:27, 23 November 2020
  • ***Input file: A0A9S0 WormBase WBGene00044742 ***Input file: H2L2A7 WormBase WBGene00001650
    23 KB (3,690 words) - 14:45, 13 May 2019
  • Part of the WormBase::API. Needs to be able to connect to multiple http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/API/Role/Service.pm
    6 KB (980 words) - 18:48, 11 August 2010
  • ...rty library, please add the library to the /js directory tree, load it via wormbase.js and document its use here or on another wiki page (or at least provide a = wormbase.js =
    5 KB (743 words) - 23:43, 13 August 2010
  • = GOC GPAD/GPI 2.0 Specifications = == Mapping from gop_ postgres tables to GPAD 2.0 column ==
    9 KB (1,306 words) - 20:52, 15 July 2021
  • * Can use outreach@wormbase.org for consistency * Shall we move tazendra.caltech.edu to the cloud? Either WormBase cloud or Caltech cloud?
    9 KB (1,366 words) - 15:19, 6 September 2018
  • WormBase GO progress report *Adopt aspects of the WormBase Ontology Annotator
    9 KB (1,339 words) - 19:02, 31 January 2013
  • **Clone wiki from PaulD: http://wiki.wormbase.org/index.php/WormBase_Model:Clone#Class_contents_WS242 * Not clear yet whether everyone (in WormBase) will use one universal database technology, or if each site might use diff
    8 KB (1,218 words) - 17:46, 2 April 2014
  • !Project_name: WormBase (WB) Version WS258 !URL: http://www.wormbase.org/
    10 KB (1,599 words) - 18:53, 24 January 2019
  • '''NOTE: This document is likely out of date. Consult WormBase::Model.pm for the most up-to-date documentation.''' Common elements are provided by WormBase::Model, superclass for all WormBase::Model::* classes. Should you come across any of these elements when conve
    2 KB (271 words) - 14:09, 19 June 2014

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