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• UserGuide:General Description
  [[An Overview of The WormBase Homepage]] GENERAL DOCUMENTATION
  2 KB (416 words) - 01:03, 22 July 2013
• GSA linking pipeline
  back to [[Caltech documentation]]<br> ==WormBase's 48 hours to complete steps 7-9==
  395 bytes (55 words) - 21:11, 23 July 2013
• Trac installation notes
  cd /usr/local/wormbase/trac/src ./configure -with-mta_user=nobody --with-trac_user=wormbase-help
  976 bytes (132 words) - 17:45, 17 August 2010
• Main Page Temp
  This is the official wiki site for [http://www.wormbase.org WormBase], the database of the model organism [http://en.wikipedia.org/wiki/Caenorha WormBase is developed by an [http://www.wormbase.org/about/staff#01--10 international consortium] of researchers and compute
  4 KB (507 words) - 08:46, 8 October 2014
• User Guide 2010:TOC
  ...a of the model nematode ''Caenorhabditis elegans'' and related nematodes. WormBase is developed by an international consortium of researchers and computer sci *[[UserGuide:General_Description|Overview of WormBase]]
  4 KB (613 words) - 09:23, 30 June 2011
• WebDev 2016.02.23-Agenda and Minutes
  ...pollo people on handling subtracks, there is an example in the [http://dev.wormbase.org:10004/index.html?data=data%2Fc_elegans_simple&loc=I%3A9861261..9879060& #**Need to make sure that documentation reflects changes and is up to date.
  3 KB (478 words) - 15:41, 23 February 2016
• Website:WormBase::API
  ...is likely out of date. Consult WormBase::Model.pm for the most up-to-date documentation.''' Common elements are provided by WormBase::Model, superclass for all WormBase::Model::* classes. Should you come across any of these elements when conve
  2 KB (271 words) - 14:09, 19 June 2014
• GFF3 features (C. briggsae)
  The WormBase ''C. briggsae'' GFF3 files can be downloaded from: ftp://ftp.wormbase.org/pub/wormbase/genomes/briggsae/genome_feature_tables/GFF3
  3 KB (334 words) - 23:13, 13 August 2010
• Update checklist template
  == Update checklist for www.wormbase.org== | Checkout changes into brie3:/usr/local/wormbase-production
  1 KB (144 words) - 18:22, 17 August 2010
• Website:Testing And Profiling
  please go to [http://wiki.wormbase.org/index.php/Unit_Testing Unit Testing] ...apache is configured as described in the [[Website:Deployment|deployment]] documentation, listening on port 8000.
  2 KB (248 words) - 18:38, 18 June 2014
• CVS Access To WormBase
  You may browse the repository at http://brebiou.cshl.edu/viewcvs/wormbase-site. The WormBase source code is freely available via anonymous CVS.
  1 KB (150 words) - 23:05, 10 August 2010
• Data mining:AQL tutorial
  AQL search [http://www.wormbase.org/db/searches/aql_query [1]] is strictly dependent on current database mo '''Documentation at AceDB web site''' [http://www.acedb.org/Software/whelp/AQL/ [2]]
  834 bytes (137 words) - 15:09, 16 June 2011
• Importing PFAM Images
  ...eved when available and displayed in a baloon tip for these domains on the Wormbase gene page. Code: $WORMBASE/util/import_export/compile_pfam_images/
  1 KB (187 words) - 23:36, 13 August 2010
• GFF3 Validation
  The code base: $WORMBASE/utils/gff3_validator/ http://dev.wormbase.org/db/validate_gff3/validate_gff3_online
  3 KB (422 words) - 23:12, 13 August 2010
• WBConfCall 2017-08-03-Agenda and Minutes
  1. wormbase.com now available on domain marketplace * https://github.com/WormBase/website/issues/5790
  2 KB (378 words) - 16:32, 3 August 2017
• NBC sign off documentation
  * File in /usr/local/wormbase/databases/{RELEASE}/orthology and automatically generated by orthology data ...h the associations available from the orthology data compile -- /usr/local/wormbase/databases/{RELEASE}/orthology/go_id2omim_ids.txt
  4 KB (583 words) - 20:22, 29 July 2011
• Cronjobs
  0 4 * * * /usr/local/wormbase/util/admin/restart_blat.pl 1 1 * * * /usr/local/bin/wb_update_wormbase.pl &gt; /usr/local/wormbase/logs/update.log
  2 KB (351 words) - 17:30, 19 June 2014
• Developer documentation
  This page contains information pertinent to employees of WormBase. = Navigating and Editing the Developer Documentation =
  12 KB (1,638 words) - 18:25, 18 June 2014
• Design Specs: Application Configuration
  Maintain and document configuration of the next generation WormBase website. ** current wormbase.conf (Config::General) file contains model info which can get complex and m
  1 KB (176 words) - 18:47, 11 August 2010
• Session management
  ...ult user and IP tables as defined by CGI::Session::Auth::DBI. Note that at WormBase, we will probably not use authentication via IP. [[Category:Developer documentation]]
  955 bytes (120 words) - 22:36, 16 August 2010

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