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• Comparison CGI
  *compare ‘GO_term "GO:000nnnn”’ in the gp_annotation.ace and exp_goid in ExprOA and output: a) count and WBpaper list of papers that have matching GO annotations
  2 KB (344 words) - 20:49, 10 February 2017
• Relations Ontology
  ...ase to describe relations between entities in the database, e.g. genes and GO terms. **Term
  3 KB (453 words) - 18:27, 20 September 2023
• UserGuide:Definitions for Life Stages
  term: all stages goid: LS:0000002 definition: All C. elegans development stages, term: embryo goid: LS:0000003 definition: The whole period of embryogenesis, fro
  19 KB (3,891 words) - 18:26, 17 August 2010
• Gene Class Descriptions
  ...in class, # concise descriptions, # of cloned genes, list of all GO-bp and GO-mf associated with genes in class ===Gene_class term info file===
  4 KB (704 words) - 18:19, 28 June 2011
• November 2012 - Weekly Pipeline Set-up
  *file format - does dictyBase produce a gpi for GO? See: http://wiki.geneontology.org/index.php/Gene_Product_Data_File_Forma *GO term identifier (already available in Dump Annotation File)
  1 KB (205 words) - 17:10, 8 November 2012
• GO entity markup
  =Trial runs with linking GO terms in GSA papers= *only the GO lexicon from AmiGo will be used
  13 KB (2,118 words) - 16:51, 20 September 2011
• General specifications
  GO term - GO ID mappings
  2 KB (204 words) - 19:18, 17 November 2011
• WS246 Models.wrm
  Orthology/Homology and the GO annotations for Process, Function and Cell component. 6) #Qualifier - Additions to combine life stage with anatomy term in expression pattern annotation.
  3 KB (413 words) - 15:51, 18 September 2014
• WormBase-Caltech Weekly Calls August 2019
  === GO Alliance slim terms === * We need to update our GO slim terms for WB GO ribbons to be in sync with Alliance
  5 KB (759 words) - 15:02, 11 September 2019
• WormBase Model:SO term
  ?SO_term Term ?Text Version SOFA_ontology UNIQUE Float // Analogous to GO, the SO version number is only to be attached
  1 KB (117 words) - 09:34, 5 October 2010
• Updating go.ace file
  *Output file: go.ace **Script on tazendra: /home/acedb/kimberly/citace_upload/go/ontology2ace/go_obo2ace/go_obo_to_go_ace.pl
  15 KB (1,936 words) - 16:29, 29 June 2018
• UserGuide:Expression Search
  ...h term, click on the "Remove" button to the right of the particular search term. Clicking on it will bring you new results. ...ase check WormBase Advanced Search for instructions on how to use AQL. Or, go to http://www.acedb.org/Software/whelp/AQL/.
  2 KB (315 words) - 18:27, 17 August 2010
• GAF to .ace file
  The new pipeline for uploading manual GO annotations will be different in that we will now get our manual annotation ...l and InterPro2GO GAF (see below) and the combined file is uploaded to the GO repository.
  3 KB (495 words) - 15:15, 24 August 2012
• WBConfCall 2020.04.16-Agenda and Minutes
  == GO-CAM model/pathway curation with orthology data == - GO term data will address this issue
  2 KB (303 words) - 18:23, 16 April 2020
• GSA-GO Linking Summary Tables
  Back to [[GO entity markup]] | align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
  29 KB (4,227 words) - 18:16, 21 September 2011
• SPELL
  GO Term Enrichment: This table shows terms from the gene ontology that are signific ...nome column has the number of genes in the entire genome annotated to that term.
  6 KB (964 words) - 18:49, 22 May 2018
• User Guide for Curators
  ...gory terms and their mapping, based on previous curation, to a GO term and GO ID. ...an autocomplete to add GO terms which should avoid any future errors in GO term entry.
  11 KB (1,765 words) - 15:10, 18 February 2014
• WormBase gene association file/archive
  In the acedb user account on Tazendra at:/home/acedb/ranjana/GO: #copy the right go.go.<date> file from /home/acedb/ranjana/citace_upload/go_curation/go_dumper_fi
  4 KB (629 words) - 18:27, 23 November 2020
• Gene Page
  -- Simplify info representation; focus on term less the method -- Action Items: Look into GO details page for ideas for rendering table; See SGDs
  3 KB (423 words) - 18:20, 14 February 2011
• Textpresso Central
  ...lack list and filtering based upon papers already annotated with Component term in gaf file **Organization of categories by task? e.g. GO curation, Phenotype curation, Expression patterns, etc.
  6 KB (901 words) - 19:21, 29 November 2011

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