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• Website::Configuration
  [[Category:WormBase 2.0]]
  62 bytes (5 words) - 17:48, 5 August 2010
• Website:Configuration
  [[Category:WormBase 2.0]]
  226 bytes (26 words) - 14:38, 19 June 2014
• Design Specs: CSS
  Define standardized scheme of the next generation WormBase website using CSS * wormbase.css
  488 bytes (68 words) - 18:48, 11 August 2010
• Doodle Polls for conference call scheduling
  [[Category:WormBase 2.0]]
  944 bytes (131 words) - 20:41, 13 August 2010
• WormBase-Caltech Weekly Calls November 2020
  ===WS279 GAF 2.0 and disease files=== *Valerio and Ranjana still working with the GAF 2.0 files to generate gene descriptions
  4 KB (695 words) - 14:44, 3 December 2020
• WBConfCall 2014.02.06-Agenda and Minutes
  == Generating gene association files that conform to the GAF 2.0 format (Ranjana, Raymond)== ...'t conform to the [http://www.geneontology.org/GO.format.gaf-2_0.shtml GAF 2.0 format] which is the industry standard, and required for the ontology brows
  4 KB (629 words) - 16:57, 6 February 2014
• WormBase gene association file
  ...le/archive here] for an archive of outdated/obsolete information about the WormBase gene association file. To view the (now deprecated) GAF 2.0 format specification, visit:
  12 KB (1,718 words) - 17:45, 5 February 2021
• WormBase gene association file/archive
  ...information about the WormBase gene association file. Click [https://wiki.wormbase.org/index.php/WormBase_gene_association_file here] for the page with curren ====Generating the WormBase gene association file====
  4 KB (629 words) - 18:27, 23 November 2020
• Specifications for source files
  ##For WormBase and dictyBase, who are sending annotations to the Protein2GO tool via web s ##WormBase: protein (C. elegans)
  2 KB (261 words) - 17:08, 16 April 2013
• Noctua - Upload of WB Manual Annotations
  = GOC GPAD/GPI 2.0 Specifications = == Mapping from gop_ postgres tables to GPAD 2.0 column ==
  10 KB (1,456 words) - 17:43, 9 November 2023
• Website:WormBase::API
  '''NOTE: This document is likely out of date. Consult WormBase::Model.pm for the most up-to-date documentation.''' Common elements are provided by WormBase::Model, superclass for all WormBase::Model::* classes. Should you come across any of these elements when conve
  2 KB (271 words) - 14:09, 19 June 2014
• Issues-5/21/2013
  | [https://github.com/WormBase/website/issues?direction=desc&labels=&milestone=10&page=1&sort=updated&stat | [https://github.com/WormBase/website/issues/assigned/tharris?direction=desc&labels=&milestone=10&sort=up
  3 KB (451 words) - 20:13, 21 May 2013
• Caltech documentation
  *[[WormBase Literature Curation Workflow]] *[[Automated gene descriptions 2.0]]
  3 KB (325 words) - 17:36, 25 April 2023
• HOWTO migrate a CGI
  ==1. Take a look at the original page on dev.wormbase.org== * Look for common elements that already existing in WormBase::Model.pm. You can ignore these (although you still need to specify them i
  3 KB (404 words) - 21:07, 9 August 2010
• Javascript libraries
  ...rty library, please add the library to the /js directory tree, load it via wormbase.js and document its use here or on another wiki page (or at least provide a = wormbase.js =
  5 KB (743 words) - 23:43, 13 August 2010
• WormBase-Caltech Weekly Calls July 2020
  ===Noctua 2.0 form ready to use=== === WormBase Webinars ===
  9 KB (1,369 words) - 22:47, 5 August 2020
• WormBase-Caltech Weekly Calls August 2018
  * Can use outreach@wormbase.org for consistency * Shall we move tazendra.caltech.edu to the cloud? Either WormBase cloud or Caltech cloud?
  9 KB (1,366 words) - 15:19, 6 September 2018
• WormBase-Caltech Weekly Calls December 2012
  WormBase GO progress report *Adopt aspects of the WormBase Ontology Annotator
  9 KB (1,339 words) - 19:02, 31 January 2013
• Design Specs: Database Connectivity
  Part of the WormBase::API. Needs to be able to connect to multiple http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/API/Role/Service.pm
  6 KB (980 words) - 18:48, 11 August 2010
• AceOjbect Redesign Page
  ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status. |[[WormBase Model:2_point_data|2_point_data]]
  12 KB (1,559 words) - 18:14, 15 June 2011
• Website:Application overview
  -rw-rw-rw- wormbase.conf ...(henceforth "the web application") and a series of external models in the WormBase::API namespace.
  10 KB (1,357 words) - 14:03, 19 June 2014
• Wormmart administration
  WormMart is WormBase's implementation of the [http://www,biomart.org BioMart] data warehouse. sudo addgroup wormbase
  8 KB (1,307 words) - 14:39, 4 November 2010
• WormBase-Caltech Weekly Calls March 2014
  **Clone wiki from PaulD: http://wiki.wormbase.org/index.php/WormBase_Model:Clone#Class_contents_WS242 * Not clear yet whether everyone (in WormBase) will use one universal database technology, or if each site might use diff
  8 KB (1,218 words) - 17:46, 2 April 2014
• Specifications for a DAF for gene-disease data
  !Project_name: WormBase (WB) Version WS258 !URL: http://www.wormbase.org/
  10 KB (1,599 words) - 18:53, 24 January 2019
• Administration:WormBase Production Environment
  The WormBase production environment consists of a series of partially redundant web and ...e root directory. It's configuration and init files are maintained in the wormbase-admin module.
  32 KB (4,370 words) - 20:48, 18 June 2014
• WBConfCall 2012.04.19-Agenda and Minutes
  * Wiki page of the current status: [http://wiki.wormbase.org/index.php/ModENCODE_Integration_status ModENCODE Integration status] Staff have been very responsive, WB 2.0 release seems to have reinvigorated staff.
  7 KB (1,182 words) - 13:50, 20 April 2012
• WormBase-Caltech Weekly Calls January 2019
  Title: WormBase 2019 - Data, Tools and Community Curation ...mBase community annotation forms and how to use them to contribute data to WormBase. We will also present updates to ParaSite, a portal for parasitic worm gen
  9 KB (1,364 words) - 15:39, 7 February 2019
• SOP for generating GO files for citace and GO consortium uploads
  ***Input file: A0A9S0 WormBase WBGene00044742 ***Input file: H2L2A7 WormBase WBGene00001650
  23 KB (3,744 words) - 15:12, 23 December 2022
• Specifications for CCC Curation from Textpresso Search Page
  ...e list of 1243 papers that Tanya sent me, I think these papers are akin to WormBase papers that are marked for 'functional annotation' only in that they (TAIR) 2) 18-column, tab-delimited GAF 2.0
  17 KB (2,749 words) - 20:04, 21 January 2011
• GBrowse Administration
  GBrowse is one of the central -- and most heavily used -- components of the WormBase site. To meet this demand, we use a number of dedicated servers using GBro 2. $app_root/$app/wormbase.env sets the GBROWSE_CONF and GBROWSE_HTDOCS environment variables.
  20 KB (2,916 words) - 15:25, 4 August 2016
• Gene Ontology
  ===WormBase Uploads=== ...produced weekly to the WormBase .ace file for upload: [[UniProtKB gpad to WormBase .ace]]
  30 KB (3,904 words) - 18:45, 13 May 2020
• Former How To Build A WormBase Mirror
  Should you wish to install WormBase locally, please see: http://www.wormbase.org/wiki/index.php/WormBase_Development_Environment
  60 KB (9,496 words) - 23:06, 13 August 2010
• Concise Descriptions
  http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=log ...ng the format Exprnnnn where n is a number; these values correspond to the WormBase ID of the Expr_pattern object; individual entries are comma-separated.
  47 KB (6,852 words) - 04:27, 8 December 2020