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  • * Raymond * Raymond in charge of documentation now
    733 bytes (88 words) - 18:32, 29 May 2013
  • | Anatomy_function||Raymond | Anatomy_name||Raymond
    1 KB (200 words) - 17:59, 6 October 2017
  • JD, Raymond * Setting up Raymond's WormMine instance
    1 KB (183 words) - 19:25, 9 May 2013
  • === Action items for Raymond === === Raymond ===
    1 KB (169 words) - 16:51, 28 May 2013
  • ! raymond #Documentation (Raymond)
    1 KB (147 words) - 14:23, 30 May 2013
  • JD, Raymond ** Assigned to Raymond
    2 KB (241 words) - 15:32, 15 May 2013
  • 8pm - 9:30pm: Tamberlyn Bieri (with laptop), Philip Ozersky (with Laptop), Raymond 9:30pm - 11pm: Raymond (Laptop), Wen Chen (with laptop),
    608 bytes (92 words) - 17:29, 20 June 2011
  • 8pm - 9:30pm: Tamberlyn Bieri (with laptop), Philip Ozersky (with Laptop), Raymond 9:30pm - 11pm: Raymond (Laptop), Wen Chen (with laptop),
    608 bytes (92 words) - 01:09, 30 June 2015
  • ** Raymond - Not about automated predictions, about manual connections of functional h * Raymond - Caltech scrambling for model changes recently. There was discussion on g
    2 KB (277 words) - 16:10, 17 November 2017
  • ''Access code has also changed, see email from Raymond to staff@wormbase for this code'' Raymond: hopefully we won’t need SimpleMine when WormMine is fully featured.<br /
    1 KB (243 words) - 16:03, 4 August 2016
  • *Raymond mentioned UI tweaks and branding *Raymond tasked with wiki for sample queries and how to create templates.
    2 KB (295 words) - 16:39, 16 May 2013
  • == Website Search Function (Raymond)==
    2 KB (263 words) - 22:55, 16 May 2017
  • * update ontology/anatom script on live -- Raymond's request for database_url
    1,008 bytes (140 words) - 17:20, 3 February 2010
  • ! raymond
    1 KB (154 words) - 14:18, 20 June 2013
  • * Raymond's proposal: each of three WB sites contributes a portion of the paper, each * Raymond: each site knows the new features and issues to bring up; could try as an e
    2 KB (378 words) - 16:32, 3 August 2017
  • Raymond: built gene-mapping tool using python Jupyter notebook and google colab. Th Raymond: might not be as good, as they might not be able to adjust things for thems
    3 KB (494 words) - 16:08, 4 June 2020
  • Raymond brings up difficulty in using coordinates to search and retrieve sequence w Raymond sees that WormMine has the capability, but returns a more detailed return b
    1 KB (209 words) - 15:52, 20 July 2023
  • Brief_id ?Text //put in for Raymond and Paul, equivalent to old Remark but shorter ...xt // the whole of old remark plus more to be added by Raymond
    2 KB (215 words) - 11:09, 10 August 2010
  • ==== Raymond: ====
    2 KB (260 words) - 11:11, 27 July 2012
  • * Raymond will spend time on AmiGO and see how can be beneficial to us. Raymond does not have yet the complete code.
    1 KB (182 words) - 10:02, 2 November 2012
  • * Raymond: would be interested in discussing ontologies and their usage in the Allian * Wen and Raymond now have access to outreach@wormbase.org account; will upload videos
    3 KB (427 words) - 15:32, 1 August 2019
  • * Caltech (Raymond, Juancarlos, Chris) worked on new phenotype summary view * Raymond will work with Daniela to get anatomy-associated images displayed on the we
    2 KB (379 words) - 16:39, 1 October 2015
  • ...ki> and select the desired configuration (e.g.: worm.cfg) (Now we're using Raymond's repository instead of the main phenote one : <nowiki>svn co https://obo.s
    4 KB (613 words) - 03:02, 19 December 2008
  • * Raymond wanted to know when this would go live because he has already updated the O * Raymond asked if anyone had objections to a simple gene data mining tool.
    2 KB (324 words) - 17:41, 2 June 2016
  • Anatomy_term ?Anatomy_term //[2006-04-21 ar2] Raymond
    413 bytes (38 words) - 08:57, 5 October 2010
  • // AO_code class - Raymond Lee 040203
    515 bytes (46 words) - 11:02, 10 August 2010
  • * Engaging Raymond more ** Raymond can do this?
    2 KB (252 words) - 15:53, 10 May 2013
  • // ?Anatomy_name - Raymond, krb [030916]
    769 bytes (70 words) - 10:43, 10 August 2010
  • // NEW Expr_profile and SK_map classes added at request of Raymond [010912 krb]
    595 bytes (73 words) - 10:27, 4 October 2010
  • ...b-future group : Todd Harris (TH), Abigail Cabunoc (AC), Adam Wright (AW), Raymond Lee (RL), Juancarlos Chan (JC), Kevin Howe (KH), Michael Paulini (MP), Paul
    526 bytes (87 words) - 16:01, 18 March 2014
  • .../WormBase/website/issues/9282 New external links for connectome display] - Raymond, can you confirm all is working as expected? Yes. They are working now. ...res, Dio, Jae, Juancarlos, Karen, Kimberly, Mark, Michael, Paolo, Ranjana, Raymond, Scott, Stavros, Steph, Todd, Valerio
    2 KB (283 words) - 15:52, 3 August 2023
  • * broken treeview (Raymond): ** would be useful for an ontology browser (Raymond)
    2 KB (339 words) - 16:20, 20 April 2017
  • Daniela: Raymond suggested to obtain standard strain names for Transgenome project. Paul Dav * Raymond: Biologically do they generate knockdown effect?
    4 KB (645 words) - 23:43, 3 October 2019
  • ...ret Duesbury, Ruihua Fang, Jolene Fernandes, Michael Han, Ranjana Kishore, Raymond Lee, Hans-Michael Müller, Cecilia Nakamura, Philip Ozersky, Andrei Petcher ...J. Fiedler, Michael Han, [[User:Tharris|Todd W. Harris]], Ranjana Kishore, Raymond Lee, Sheldon McKay, Hans-Michael Müller, Cecilia Nakamura, Philip Ozersky,
    6 KB (781 words) - 02:18, 1 April 2012
  • *Raymond and Juancarlos have taken AMIGO2 infrastructure to make an ontology browser *Raymond has set up a server
    5 KB (850 words) - 15:32, 5 September 2013
  • *** Raymond responded with a linked to Paul David's response in similar ticket #6735 *Raymond introduced Fernand to the team. He is focusing on anatomy function curation
    2 KB (315 words) - 21:06, 3 July 2020
  • Wen: metadata is mostly mapping ontology terms and it should be in Raymond's domain of expertise but she will be be part of the WG. Raymond: finalize workshop presentation? Scott will send slides and/or a recording
    2 KB (414 words) - 16:14, 18 May 2023
  • #*SObAs(raymond) ...enrichment (Tissue, Phenotype, GO) & SObA (Phenotype, GO, and Tissue(?)) (Raymond)
    3 KB (466 words) - 09:34, 3 March 2017
  • // Anatomy_function class for Raymond
    1 KB (119 words) - 10:41, 10 August 2010
  • *next officer Raymond Aug 6 ...on. Involves strain data that will be propagated to gene and allele pages. Raymond proposes that YouTube host the movies and we provide the links. Todd likes
    3 KB (560 words) - 16:24, 2 August 2012
  • ==== Raymond: ====
    4 KB (503 words) - 08:30, 22 June 2012
  • ...rating gene association files that conform to the GAF 2.0 format (Ranjana, Raymond)== ...which is the industry standard, and required for the ontology browser that Raymond and Juancarlos are working on.
    4 KB (629 words) - 16:57, 6 February 2014
  • ! raymond
    2 KB (215 words) - 14:45, 11 June 2013
  • * Raymond: possible lunch meeting
    849 bytes (126 words) - 16:46, 16 June 2017
  • * Raymond - I would prefer one system used by everyone. * Raymond - we should encourage site-spcific projects on GitHub.
    4 KB (708 words) - 16:41, 16 July 2015
  • Bottom_up_modelling // for Raymond in the future for cell upwards approach
    2 KB (159 words) - 11:11, 10 August 2010
  • **Raymond - we do care where this data comes from ***Raymond will proof-read papers to check on corresponding author designation and ema
    3 KB (407 words) - 01:16, 19 February 2011
  • Raymond is thinking about an easy to display solution. Maybe adding more info to th Raymond, Daniela, Eduardo and Wen are planning to start working on this in late Feb
    3 KB (462 words) - 17:47, 4 February 2021
  • ....html Web Resources for ''C. elegans''] - WormBook's WormMethod chapter by Raymond Lee containing core web resources for ''C. elegans'' research
    1 KB (202 words) - 10:16, 11 June 2012
  • * Raymond and Eduardo talked about taking it over * Raymond working on writing paper
    4 KB (605 words) - 15:21, 3 March 2020
  • ! raymond
    2 KB (298 words) - 14:47, 18 June 2013
  • Karen, Lincoln, Raymond Raymond, JD, Kevin, Todd, Paul S, Michael P
    4 KB (689 words) - 11:13, 29 August 2013
  • * Raymond - Flybase has experience of moving to a new system. They may be able to adv * Raymond - we check the numbers in our classes.
    4 KB (645 words) - 08:57, 27 August 2014
  • * Raymond: what about large publications like NAR papers? * Raymond: We could use use WBPerson or Analysis objects as appropriate.
    8 KB (1,246 words) - 15:52, 12 November 2013
  • 3. SoBa Graph for NAR paper. Raymond will discuss with Sibyl on how to change the display.
    1 KB (165 words) - 18:42, 15 August 2019
  • Raymond couldn't see a problem but deferred to Kimberly and Juancarlos to look into Raymond volunteered to prepare and circulate a template.
    3 KB (486 words) - 11:14, 21 December 2011
  • *** Stavros and Raymond agreed to be representatives; may ask Todd as website representative
    1 KB (184 words) - 18:13, 16 February 2023
  • * Raymond will write up a Wiki page for documentation * Raymond will pilot this with help docs for the new SObA phenotype graph
    5 KB (776 words) - 16:50, 7 January 2016
  • * Raymond working on display for paper * Raymond, Juancarlos working on
    7 KB (1,010 words) - 17:08, 4 May 2017
  • * Raymond, Valerio (community curation), Wen (Simple mine)
    787 bytes (115 words) - 04:11, 4 November 2021
  • * Raymond : use Ranjana's document to organize talks, review topics, and other things * Todd could do the tools talk, otherwise Raymond could.
    7 KB (1,113 words) - 18:19, 6 April 2023
  • * GitHub ticket 6775 - Raymond will respond * Raymond interested in this issue as well; Scott, Chris, and Raymond will discuss and come up with an automated approach
    4 KB (575 words) - 18:18, 6 December 2018
  • * Raymond & Juancarlos will work on a SObA graph for GO annotations * Raymond and Juancarlos are working on it
    4 KB (544 words) - 16:22, 5 January 2017
  • *Daniela [Karen/Raymond filling in as conference moderator] **Raymond suggests making a division between for-profit or non-profit, Paul S. sugges
    3 KB (420 words) - 16:02, 17 August 2017
  • '''Raymond - is there a policy to deal with questions from students'''
    1 KB (181 words) - 15:47, 2 November 2017
  • * Raymond will try to remember to forward to staff * Daniela, Wen, Valerio, Eduardo, Raymond met with CeNGEN
    5 KB (777 words) - 13:18, 1 April 2021
  • **position_matrix (Raymond) **rearrangment (Raymond, Mary Ann?)
    7 KB (1,077 words) - 16:26, 20 July 2017
  • Raymond: We have only stored the image and final analysis<br> Raymond: One postgres, two data streams one to acedb and a second to alliance<br>
    4 KB (709 words) - 13:27, 5 April 2021
  • * Raymond: we should have a focus to the SAB meeting like collaborative efforts with * Raymond: we should have a focus to the SAB meeting like collaborative efforts with
    4 KB (684 words) - 19:43, 5 December 2015
  • * Raymond: We should try to write so that the content remains pertinent for a while * Karen asked Raymond/Gary and any other person interested in the group to help with pharyngeal p
    7 KB (1,073 words) - 16:26, 2 March 2017
  • Raymond has been working on a prototype. People should try it and give feedback.
    1 KB (203 words) - 16:53, 16 February 2017
  • Raymond * Raymond & Chris - fixed gene interaction table dumping script
    4 KB (624 words) - 17:15, 4 April 2013
  • Raymond - can you know if other people have read the message? Other possibility - LINE (Raymond) - could check to see if someone read it
    3 KB (477 words) - 16:23, 19 March 2015
  • * Raymond encountering challenges with setting up regular meeting room reservations i * Anatomy function project with Raymond
    3 KB (542 words) - 16:49, 1 July 2021
  • *Raymond and Juancarlos working on it *Raymond: Assume that once logged into another machine, your keystrokes could be mon
    5 KB (752 words) - 17:07, 7 July 2011
  • **Raymond will send Paul Davis link to page that describes sequence verification
    1 KB (205 words) - 16:55, 17 May 2012
  • ....html Web Resources for ''C. elegans''] - WormBook's WormMethod chapter by Raymond Lee containing core web resources for ''C. elegans'' research
    2 KB (284 words) - 22:43, 16 August 2010
  • *Raymond setup FTP directory for Wen ***Raymond re-installed WS database
    4 KB (651 words) - 16:11, 2 May 2013
  • * Raymond's LEGO-like approach to curating anatomy function * Raymond (WormBase ontology browser)
    6 KB (857 words) - 16:01, 2 October 2014
  • In the future (thank you, Raymond): Contact Person: Raymond Lee
    5 KB (746 words) - 18:57, 10 August 2010
  • ** Raymond, Chris, Ranjana, Valerio, Daniela, Kimberly * Raymond gets slim terms into Solr from OBO release file; Sibyl collecting from diff
    5 KB (759 words) - 15:02, 11 September 2019
  • * Plans to add annotation searches for GO and AO, then bring in input from Raymond, Ranjana, Kimberly
    1 KB (150 words) - 16:37, 12 May 2010
  • ...sentations/2005.11-SAB-CSHL/RL-2005-SAB-AO.ppt Cells and anatomy ontology, Raymond Lee]
    2 KB (238 words) - 12:04, 20 January 2011
  • * Raymond - are we ready to implement as a widget on person page? * Raymond installing new network card
    4 KB (646 words) - 17:33, 1 September 2016
  • ** Chris Grove, Kimberly Van Auken, Raymond Lee, Karen Yook, Paul Sternberg, Wen Chen, Ranjana Kishore, Juancarlos Chan * Raymond Lee -- ontology tools etc.
    5 KB (696 words) - 13:32, 13 July 2018
  • ...niela, Faye, Jae, Juancarlos, Karen, Kimberly, Magz, Mark, Paulo, Ranjana, Raymond, Scott, Stavros, Todd, Valerio, Wen
    2 KB (239 words) - 17:32, 3 December 2020
  • | Raymond ||3/16-3/29 ||8/3-8/16
    2 KB (241 words) - 23:04, 13 August 2010
  • * coordination between CalTech and Hinxton (Gary, Raymond, Wen), due to the large scale analysis data
    2 KB (213 words) - 18:30, 1 February 2018
  • |[[User:raymond|Raymond]] |[[User:raymond|Raymond]]
    16 KB (2,207 words) - 23:06, 9 January 2014
  • *Raymond: how stable is Datomic? *Raymond: how do we deal with discrepancies between acedb and datomic
    7 KB (1,137 words) - 17:57, 17 November 2016
  • ...gene knockdown phenotypes for more than 100 individual RNAi experiments.||raymond@its.caltech.edu ...e loss in a particular cell lineage leads to loss of mutant rescue, etc. ||raymond@its.caltech.edu
    11 KB (1,688 words) - 11:06, 21 December 2011
  • Raymond: Would be good if there were two dynamic links which were updated as Raymond: it's useful to have new release (dev) ASAP. Would like to continue to
    7 KB (1,220 words) - 15:50, 25 November 2011
  • === Tissue enrichment tool (Raymond) ===
    5 KB (689 words) - 15:35, 7 April 2016
  • *Raymond: integration is important; we need to talk about how much work needs to be **Raymond: will look at it
    13 KB (2,097 words) - 22:48, 7 April 2011
  • * Ranjana will discuss with Raymond and Kevin * Juancarlos and Raymond have been working on
    5 KB (818 words) - 15:55, 1 November 2018
  • Some discussion from Todd and Raymond, modified model slightly.
    3 KB (354 words) - 11:08, 3 December 2010
  • ...n leverage the flow from the CalTech site visits to organise the workshop (Raymond / Kimberley)
    2 KB (280 words) - 17:48, 1 April 2019
  • * Ranjana forwarded a help desk issue, will make a ticket. Raymond, have we offered what they want ? Magda and Mark will look into it. Paul
    2 KB (279 words) - 16:01, 7 July 2022
  • ...gene knockdown phenotypes for more than 100 individual RNAi experiments.||raymond@its.caltech.edu ...e loss in a particular cell lineage leads to loss of mutant rescue, etc. ||raymond@its.caltech.edu
    16 KB (2,310 words) - 11:05, 21 December 2011
  • * Raymond: One person from each site should be there to cover any WormBase knowledge. * Raymond: Help desk github ticket was removing contact information. Now that github
    5 KB (794 words) - 16:30, 3 June 2021

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