User contributions
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Jump to navigationJump to search- 15:17, 22 May 2008 diff hist 0 N File:2-2008-SAB-Harris.ppt current
- 15:07, 22 May 2008 diff hist +1 2008-SAB Meeting
- 15:07, 22 May 2008 diff hist -35 2008-SAB Meeting
- 15:06, 22 May 2008 diff hist 0 N File:11-2008-SAB-Blasiar.ppt current
- 14:33, 22 May 2008 diff hist 0 m 2008-SAB Meeting 2008-SAB-Meeting Scientific moved to 2008-SAB Meeting: forked page name
- 14:33, 22 May 2008 diff hist +30 N 2008-SAB-Meeting Scientific 2008-SAB-Meeting Scientific moved to 2008-SAB Meeting: forked page name current
- 13:38, 22 May 2008 diff hist +209 2008-SAB Meeting
- 13:30, 22 May 2008 diff hist 0 N File:6-2008-SAB-DeLaCruz.ppt current
- 13:28, 22 May 2008 diff hist +64 2008-SAB Meeting
- 13:15, 22 May 2008 diff hist 0 N File:5-2008-SAB-Han.ppt current
- 13:13, 22 May 2008 diff hist 0 N File:3-2008-SAB-McKay.ppt current
- 13:12, 22 May 2008 diff hist -30 2008-SAB Meeting
- 13:09, 22 May 2008 diff hist 0 N File:4-2008-SAB-Rogers.ppt current
- 13:09, 22 May 2008 diff hist +134 2008-SAB Meeting
- 13:05, 22 May 2008 diff hist +324 2008-SAB Meeting
- 11:06, 22 May 2008 diff hist +1,540 N 2008-SAB Meeting New page: __TOC__ =2008 Scientific Advisory Board Meeting= WormBase Advisory Board Meeting Wellcome Trust Sanger Institute 21-23 May 2008 ==Wednesday 21st May – Pre-meeting (WormBase staff only...
- 14:54, 21 May 2008 diff hist +180 N-Browse Installation & Interaction Data
- 20:38, 17 May 2008 diff hist +49 MySQL database replication
- 20:29, 17 May 2008 diff hist +1,788 MySQL database replication
- 19:16, 17 May 2008 diff hist +144 WormBase Infrastructure
- 19:06, 17 May 2008 diff hist +50 WormBase Infrastructure
- 19:04, 17 May 2008 diff hist +244 WormBase Infrastructure
- 19:00, 17 May 2008 diff hist +357 MySQL database replication
- 18:52, 17 May 2008 diff hist +136 MySQL database replication
- 18:50, 17 May 2008 diff hist +652 N MySQL database replication New page: = Description = We use mysql replication to mirror mysql databases from a single master mysqld server to a series of slave servers on back end nodes. This process is asynchronous and asym...
- 18:44, 17 May 2008 diff hist +1 Developer documentation
- 18:44, 17 May 2008 diff hist +228 Developer documentation
- 10:05, 3 May 2008 diff hist +46 Release Schedule
- 12:04, 22 April 2008 diff hist -81 Release Schedule
- 12:03, 22 April 2008 diff hist +1,127 Release Schedule
- 10:03, 18 April 2008 diff hist 0 N File:Iplant.png current
- 11:13, 16 April 2008 diff hist -63 Main Page
- 11:13, 16 April 2008 diff hist +640 Main Page
- 16:23, 8 April 2008 diff hist +41 Release Schedule →Release History
- 14:26, 23 March 2008 diff hist +88 Developer documentation →Getting started
- 14:10, 23 March 2008 diff hist +78 Developer documentation
- 14:07, 22 March 2008 diff hist +25 WS188 update checklist →Update checklist for www.wormbase.org current
- 14:01, 22 March 2008 diff hist +5 WS188 update checklist →Update checklist for www.wormbase.org
- 12:22, 22 March 2008 diff hist +73 Developer documentation →Administration
- 12:18, 22 March 2008 diff hist +995 WS188 update checklist
- 11:46, 22 March 2008 diff hist -70 Release Schedule →Upcoming Releases
- 11:45, 22 March 2008 diff hist +82 Release Schedule →Release History
- 11:40, 22 March 2008 diff hist -430 Project Calendar current
- 11:14, 22 March 2008 diff hist +382 Project Calendar
- 11:11, 22 March 2008 diff hist +312 N Project Calendar New page: <googlecalendar>ht3jlfaac5lfd6263ulfh4tql8%40group.calendar.google.com</googlecalendar> What is it <iframe src="http://www.google.com/calendar/embed?src=pgo1792vogc66levsk3no4g6sc%40group...
- 11:05, 22 March 2008 diff hist +22 Main Page →For Developers
- 10:57, 22 March 2008 diff hist +69 Formal development strategy →Sample Development Timeline
- 10:57, 22 March 2008 diff hist -1 Formal development strategy →Sample Development Timeline
- 10:56, 22 March 2008 diff hist +59 Formal development strategy →3. Step 3. Releasing new software and databases into production
- 10:49, 22 March 2008 diff hist +12 Update checklist template →Update checklist for www.wormbase.org
- 10:48, 22 March 2008 diff hist +64 CSHL documentation →Update Checklist
- 10:46, 22 March 2008 diff hist +978 N Update checklist template New page: == Update checklist for www.wormbase.org== {| border=1 ! Task ! Description ! Status |- | Check diskspace on available nodes | ssh [node] df -h | |- | Checkout new code | Checkout changes...
- 10:45, 22 March 2008 diff hist +21 CSHL documentation →Update Checklist
- 10:45, 22 March 2008 diff hist +13 CSHL documentation →Update Checklist
- 10:45, 22 March 2008 diff hist +9 Template:Update checklist template current
- 10:44, 22 March 2008 diff hist +965 N Template:Update checklist template New page: Update checklist for www.wormbase.org. {| ! Task ! Description ! Status |- | Check diskspace on available nodes | ssh [node] df -h | |- | Checkout new code | Checkout changes into brie3:/...
- 10:35, 22 March 2008 diff hist +29 N WS188 update checklist New page: {{update_checklist_template}}
- 10:31, 22 March 2008 diff hist +51 CSHL documentation
- 18:47, 21 March 2008 diff hist +339 Log file management and analysis →Analog
- 18:42, 21 March 2008 diff hist +165 Log file management and analysis →Mint
- 18:31, 21 March 2008 diff hist +980 N Log file management and analysis New page: =Approaches= I've used just about every logfile analysis tool known to man. Here are a few I use regularly. ==Analog== ==awstats== ==Visitors== Website: http://hping.org/visitors Li...
- 18:11, 21 March 2008 diff hist +39 CSHL documentation →General Admin
- 18:24, 15 March 2008 diff hist +67 Developer documentation →Software platform
- 17:28, 11 March 2008 diff hist -8 User:Tharris
- 09:16, 28 February 2008 diff hist +152 C.remanei minor edits and formatting
- 10:15, 24 February 2008 diff hist +85 Converting GFF2 to GFF3
- 01:45, 16 February 2008 diff hist +43 Release Schedule →Release History
- 01:44, 16 February 2008 diff hist +41 Release Schedule →Release History
- 01:42, 16 February 2008 diff hist -71 Release Schedule →Upcoming Releases
- 01:42, 16 February 2008 diff hist +84 Main Page →Using WormBase
- 13:07, 13 February 2008 diff hist +2,599 HOWTO migrate a CGI
- 23:08, 12 February 2008 diff hist +217 Developer documentation →Presentations
- 23:07, 12 February 2008 diff hist +35 N File:2008.02.13-on configuration.key.tgz Part II: On Configuration (keynote) current
- 23:05, 12 February 2008 diff hist +43 N File:2008.02.13-on configuration.pdf Part II of CSHL introduction: configuration current
- 22:06, 12 February 2008 diff hist -5 Developer documentation →Presentations
- 22:05, 12 February 2008 diff hist -1 Developer documentation →Presentations
- 22:04, 12 February 2008 diff hist +293 Developer documentation
- 22:03, 12 February 2008 diff hist +58 N File:2008.01.23-site intro.pdf CSHL conference call, 2008.01,23: Pt 1: Introduction - pdf current
- 21:53, 12 February 2008 diff hist +51 N File:2008.01.23-CSHL call intro.key.tgz 2008.01.23: Reimplementation, Pt 1: Intro (keynote) current
- 20:50, 10 February 2008 diff hist +460 N HOWTO migrate a CGI New page: conversion outline: 1. create model and controller script/wormbase_create.pl controller Your_class script/wormbase_create.pl model Your_class 2. rip code from CGI, marking cleared c...
- 20:49, 10 February 2008 diff hist +124 Developer documentation →Migration documentation
- 00:47, 10 February 2008 diff hist -5,681 Coding standards →Documentation
- 00:46, 10 February 2008 diff hist +14 Coding standards →Function braces
- 00:45, 10 February 2008 diff hist 0 Coding standards
- 00:44, 10 February 2008 diff hist -238 Coding standards
- 00:37, 10 February 2008 diff hist -2,509 Coding standards
- 23:39, 9 February 2008 diff hist -1,035 Coding standards →Variable names
- 12:13, 9 February 2008 diff hist -1 Release Schedule →Release History
- 12:04, 9 February 2008 diff hist +94 Developer documentation →Migration documentation
- 12:59, 6 February 2008 diff hist -103 Release Schedule →Access Statistics
- 12:52, 6 February 2008 diff hist -2 Release Schedule →Access Statistics
- 12:51, 6 February 2008 diff hist +4,703 Release Schedule
- 11:35, 6 February 2008 diff hist +9 Main Page →Using WormBase
- 11:34, 6 February 2008 diff hist 0 m Release Schedule Release moved to Release Schedule: more informative name!
- 11:34, 6 February 2008 diff hist +30 N Release Release moved to Release Schedule: more informative name! current
- 15:42, 5 February 2008 diff hist +552 Release Schedule →Release Schedule
- 19:44, 17 January 2008 diff hist -8 2008.01-Toronto →Thursday
- 19:43, 17 January 2008 diff hist +252 2008.01-Toronto →Thursday
- 13:17, 17 January 2008 diff hist +1,279 Website:Application overview →Generic Controller Actions
- 13:08, 17 January 2008 diff hist -30 Website:Application overview →Specifying configuration
- 13:07, 17 January 2008 diff hist -810 Website:Application overview →Setting up a new page
- 13:07, 17 January 2008 diff hist +1,070 Website:Application overview →Creating new Models and Controllers
- 13:04, 17 January 2008 diff hist +1,056 Website:Application overview →Creating new Models and Controllers
- 12:48, 17 January 2008 diff hist -219 Website:Application overview →Widgets
- 12:48, 17 January 2008 diff hist +145 Website:Application overview →Example
- 12:47, 17 January 2008 diff hist +94 Website:Application overview →Pages
- 12:46, 17 January 2008 diff hist 0 Website:Application overview →PAGES
- 12:45, 17 January 2008 diff hist -345 Website:Application overview →Quick Overview
- 12:43, 17 January 2008 diff hist -7 Website:Application overview →Application structure
- 12:40, 17 January 2008 diff hist +2,530 Website:Application overview →Application structure
- 10:10, 17 January 2008 diff hist -1 2008.01-Toronto →Wednesday
- 10:06, 17 January 2008 diff hist +141 2008.01-Toronto →Wednesday
- 10:05, 17 January 2008 diff hist +17 2008.01-Toronto →Accomplishments
- 10:04, 17 January 2008 diff hist +260 2008.01-Toronto →Wednesday
- 10:02, 17 January 2008 diff hist +24 2008.01-Toronto →AM
- 15:01, 16 January 2008 diff hist +150 Website:Application overview →Creating new Models and Controllers
- 14:37, 16 January 2008 diff hist +1,010 Website:Application overview →Directory Structure
- 13:38, 16 January 2008 diff hist +2 Developer documentation →Software platform
- 13:37, 16 January 2008 diff hist -79 Developer documentation →Software platform
- 13:36, 16 January 2008 diff hist 0 Developer documentation →Software platform
- 13:36, 16 January 2008 diff hist +15,568 Coding standards
- 13:29, 16 January 2008 diff hist +53 2008.01-Toronto →Wednesday
- 13:27, 16 January 2008 diff hist -28 Developer documentation →Software platform
- 13:22, 16 January 2008 diff hist +631 Website:Application overview
- 13:17, 16 January 2008 diff hist +91 2008.01-Toronto →Wednesday
- 13:15, 16 January 2008 diff hist +638 Website:Application overview
- 13:06, 16 January 2008 diff hist -1 2008.01-Toronto →Accomplishments
- 13:06, 16 January 2008 diff hist +112 2008.01-Toronto →Wednesday
- 13:06, 16 January 2008 diff hist +132 Developer documentation
- 13:03, 16 January 2008 diff hist +77 2008.01-Toronto →Wednesday
- 13:02, 16 January 2008 diff hist +850 N Website:Application overview New page: = Configuration = Catalyst offers a powerful configuration system. We use it to provide application-wide, per-page, and per-session configuration. In addition, local configuration files...
- 12:09, 16 January 2008 diff hist +3 Developer documentation →Software platform
- 11:32, 16 January 2008 diff hist +7 2008.01-Toronto →Accomplishments
- 11:23, 16 January 2008 diff hist +131 2008.01-Toronto →Accomplishments
- 10:39, 16 January 2008 diff hist +23 2008.01-Toronto →AM
- 10:39, 16 January 2008 diff hist +103 2008.01-Toronto →PM
- 10:21, 16 January 2008 diff hist -1,110 CSHL documentation
- 10:21, 16 January 2008 diff hist +121 CSHL documentation
- 10:20, 16 January 2008 diff hist -30 Developer documentation
- 10:18, 16 January 2008 diff hist +28 Developer documentation
- 10:17, 16 January 2008 diff hist -829 Developer documentation
- 10:14, 16 January 2008 diff hist +29 Main Page →For Developers
- 10:13, 16 January 2008 diff hist +1,956 N Developer documentation New page: This page contains information pertinent to developers of WormBase. = Reimplementation = == Hardware platform == * Logical structure * Physical structure * [[Performance optimiz...
- 09:05, 16 January 2008 diff hist +70 CSHL documentation →Software platform
- 16:47, 15 January 2008 diff hist 0 CSHL documentation →[[Developer_meetings|Developer Meetings]]
- 16:46, 15 January 2008 diff hist +51 CSHL documentation →[[Developer_meetings|Developer Meetings]]
- 16:46, 15 January 2008 diff hist +21 CSHL documentation →Developer Meetings
- 16:44, 15 January 2008 diff hist +1,587 N 2008.01-Toronto New page: __TOC__ = Toronto, 14 January - 18 January 2008 = == Agenda == ===OBJECTIVES=== * Describe how to develop for the WormBase implementation * Decide on best practices for team developmen...
- 16:43, 15 January 2008 diff hist +26 CSHL documentation
- 15:45, 15 January 2008 diff hist -6 Establishing the SVN repository
- 15:45, 15 January 2008 diff hist +10 Establishing the SVN repository
- 15:44, 15 January 2008 diff hist +299 N Establishing the SVN repository New page: Here's how the WormBase subversion repository was established. <nowiki> ssh brie3 cd /usr/local sudo mkdir svn sudo chgrp wormbase svn sudo chmod 2775 svn cd projects mkdir temp mv wormb...
- 15:42, 15 January 2008 diff hist +81 CSHL documentation →Development
- 14:48, 15 January 2008 diff hist 0 CSHL documentation →Software platform
- 14:47, 15 January 2008 diff hist -103 CSHL documentation →Software platform
- 14:36, 15 January 2008 diff hist +103 CSHL documentation →Software platform
- 09:37, 8 January 2008 diff hist -38 Release notes →Statistics by release
- 15:16, 23 December 2007 diff hist +312 Release notes →Statistics by release
- 10:07, 19 December 2007 diff hist -247 Mailing lists
- 10:06, 19 December 2007 diff hist +104 Mailing lists →Internal Mailing Lists
- 10:05, 19 December 2007 diff hist +209 Mailing lists →Public Mailing Lists
- 10:03, 19 December 2007 diff hist -66 Mailing lists →Archives
- 10:02, 19 December 2007 diff hist +633 Mailing lists →Archives
- 12:29, 2 December 2007 diff hist 0 Release notes →Statistics by release
- 12:29, 2 December 2007 diff hist +312 m Release notes →Statistics by release
- 18:59, 30 November 2007 diff hist +528 N Editorial policy New page: ==WormBase Policy on changing meeting abstracts== Paul Sternberg (with consultation with Tim Schedl, Martin Chalfie, Cori Bargmann, and Jonathan Hodgkin; November 2007) Typos can be fixe...
- 18:58, 30 November 2007 diff hist +54 Main Page →Using WormBase
- 11:13, 30 November 2007 diff hist +122 How to build a frozen release →Configuring VMXs as hosted frozen releases
- 09:03, 12 November 2007 diff hist +312 Release notes →Statistics by release
- 21:53, 11 November 2007 diff hist -156 RSS implementation
- 21:30, 11 November 2007 diff hist +3,763 N RSS implementation New page: ==OBJECTIVE== Create a simple RSS based notification system to easily track changes to any given object in the database. ==Approach== Since our databases are build-use-discard, the RSS ...
- 20:51, 11 November 2007 diff hist +100 CSHL documentation →Development
- 20:49, 11 November 2007 diff hist +614 RSS news feeds
- 11:20, 7 November 2007 diff hist +28 Main Page →Using WormBase
- 10:50, 7 November 2007 diff hist +26 Main Page →Using WormBase
- 10:49, 7 November 2007 diff hist +1 Main Page →Community Resources
- 10:58, 1 November 2007 diff hist 0 CSHL documentation →Software platform
- 10:15, 1 November 2007 diff hist +11 CSHL documentation →Software platform
- 10:14, 1 November 2007 diff hist -1 CSHL documentation →Software platform
- 10:13, 1 November 2007 diff hist +44 N Installing Catalyst Installing Catalyst moved to Installing the Web Application: better name current
- 09:59, 1 November 2007 diff hist +98 CSHL documentation →Software platform
- 09:57, 1 November 2007 diff hist +25 CSHL documentation →Software platform
- 09:27, 25 October 2007 diff hist +88 Release notes →Statistics by release
- 14:10, 16 October 2007 diff hist +377 Virtual Machines →Updating the Software
- 13:44, 16 October 2007 diff hist +67 Virtual Machines →Navigating WormBase
- 13:44, 16 October 2007 diff hist +66 Virtual Machines →Download Instructions
- 13:43, 16 October 2007 diff hist -197 Virtual Machines →Download Instructions
- 13:40, 16 October 2007 diff hist -21 Virtual Machines →Downloading
- 13:39, 16 October 2007 diff hist -23 Virtual Machines →Downloading via the command line client curl
- 13:35, 16 October 2007 diff hist +3 How to build a WormBase Virtual Machine →Users and groups
- 13:30, 16 October 2007 diff hist +2 Main Page →Staying up-to-date
- 13:29, 16 October 2007 diff hist +1 Main Page →Staying up-to-date
- 13:29, 16 October 2007 diff hist -1 Virtual Machines →Updating the Software
- 13:28, 16 October 2007 diff hist -11 Virtual Machines →Logging in
- 13:28, 16 October 2007 diff hist -21 Virtual Machines →Unpacking a downloaded torrent
- 13:27, 16 October 2007 diff hist -2,746 Virtual Machines →Available Virtual Machines
- 13:25, 16 October 2007 diff hist -36 Main Page →For Developers
- 20:09, 9 October 2007 diff hist +122 How to build a WormBase Virtual Machine →Quick Start Guide
- 15:59, 8 October 2007 diff hist -1 Downloads →GFF2
- 23:03, 6 October 2007 diff hist -16 How to build a frozen release →Configuring VMXs as hosted frozen releases
- 22:50, 6 October 2007 diff hist +2 How to build a frozen release →Configuring VMXs as hosted frozen releases
- 20:31, 4 October 2007 diff hist +149 How to build a WormBase Virtual Machine →Building virtual disks for a new release
- 20:29, 4 October 2007 diff hist -443 How to build a WormBase Virtual Machine
- 20:24, 4 October 2007 diff hist -139 How to build a WormBase Virtual Machine
- 20:17, 4 October 2007 diff hist -369 How to build a WormBase Virtual Machine →Updating the software after distribution
- 19:34, 4 October 2007 diff hist +248 WormBase Infrastructure →Frozen release servers
- 14:12, 4 October 2007 diff hist +205 Mailing lists →Public Mailing Lists
- 14:10, 4 October 2007 diff hist 0 Virtual Machines
- 14:10, 4 October 2007 diff hist +6 Virtual Machines →Mailing List
- 14:09, 4 October 2007 diff hist +687 Virtual Machines
- 13:57, 4 October 2007 diff hist -1,561 Virtual Machines
- 11:50, 4 October 2007 diff hist +551 Managing Perl libraries across nodes
- 20:04, 3 October 2007 diff hist -1,527 How to build a frozen release
- 20:03, 3 October 2007 diff hist -1,800 How to build a WormBase Virtual Machine →Configuring VMXs as hosted frozen releases
- 20:00, 3 October 2007 diff hist -1,232 How to build a WormBase Virtual Machine
- 19:46, 3 October 2007 diff hist +602 How to build a WormBase Virtual Machine
- 19:25, 3 October 2007 diff hist +245 How to build a WormBase Virtual Machine →Building virtual disks for a new release
- 19:19, 3 October 2007 diff hist -25 How to build a WormBase Virtual Machine →Directory structure of the Virtual Machines
- 18:39, 3 October 2007 diff hist -112 Former How To Build A WormBase Mirror →Installing Perl modules
- 18:06, 3 October 2007 diff hist +294 How to build a WormBase Virtual Machine
- 18:04, 3 October 2007 diff hist -486 How to build a WormBase Virtual Machine →About the WormBase core virtual machines
- 18:03, 3 October 2007 diff hist -6 How to build a WormBase Virtual Machine →Base Virtual Machines
- 17:37, 3 October 2007 diff hist +107 CSHL documentation →Software platform
- 17:36, 3 October 2007 diff hist +349 How to build a WormBase Virtual Machine →Building virtual disks for a new release
- 16:55, 3 October 2007 diff hist +98 How to build a WormBase Virtual Machine →Directory structure of the Virtual Machines
- 16:49, 3 October 2007 diff hist +626 How to build a WormBase Virtual Machine
- 16:43, 3 October 2007 diff hist +29 How to build a WormBase Virtual Machine →Updating the software
- 16:42, 3 October 2007 diff hist +557 How to build a WormBase Virtual Machine →Virtual Machine exceptions
- 16:33, 3 October 2007 diff hist +70 How to build a WormBase Virtual Machine →Overview
- 15:26, 3 October 2007 diff hist -35 CSHL documentation →Reimplementation
- 15:26, 3 October 2007 diff hist +160 CSHL documentation →Software platform
- 15:24, 3 October 2007 diff hist -172 CSHL documentation →Administration
- 15:21, 3 October 2007 diff hist +1 CSHL documentation →Administration
- 15:20, 3 October 2007 diff hist +23 Base node configuration - CentOS5
- 15:18, 3 October 2007 diff hist +1,477 N Base node configuration - CentOS5 New page: Configuring a fresh install of Cent OS 5 for WormBase Install and configure Apache2, mod_perl,and php5 > yum install httpd httpd-devel > yum install mod_perl > yum install php php-gd php-...
- 15:15, 3 October 2007 diff hist -13 CSHL documentation
- 15:14, 3 October 2007 diff hist -2 CSHL documentation →Hardware platform
- 15:14, 3 October 2007 diff hist +58 CSHL documentation →Hardware platform
- 15:13, 3 October 2007 diff hist +303 Website:Monitoring services →What WormBase monitors
- 15:11, 3 October 2007 diff hist +73 Website:Monitoring services
- 15:09, 3 October 2007 diff hist +68 Website:Monitoring services →Configuring monit
- 15:08, 3 October 2007 diff hist +708 Website:Monitoring services
- 15:01, 3 October 2007 diff hist +782 N Website:Monitoring services New page: = Overview = Load-balancing and automatic failover mechanisms are essential components of a high-availability system. Equally important is efficient detection of failing services and ser...
- 14:48, 3 October 2007 diff hist 0 CSHL documentation →Administration
- 14:48, 3 October 2007 diff hist -12 CSHL documentation →Administration
- 14:46, 3 October 2007 diff hist +4 CSHL documentation →Monitoring
- 14:45, 3 October 2007 diff hist +33 CSHL documentation →Monitoring
- 12:01, 3 October 2007 diff hist +124 How to build a WormBase Virtual Machine →About the WormBase core virtual machines
- 20:48, 2 October 2007 diff hist +69 Managing Perl libraries across nodes
- 20:05, 2 October 2007 diff hist -19 Managing Perl libraries across nodes →Initial module list