User contributions
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Jump to navigationJump to search- 21:19, 23 September 2007 diff hist +52 BASIC PROTOCOL 3: EXAMINING A GENE IN C. ELEGANS
- 21:19, 23 September 2007 diff hist +26 BASIC PROTOCOL 2: PERFORMING A DATABASE SEARCH
- 21:16, 23 September 2007 diff hist +26 BASIC PROTOCOL 1: NAVIGATING THE WormBase HOME PAGE
- 21:06, 23 September 2007 diff hist -8 BASIC PROTOCOL 1: NAVIGATING THE WormBase HOME PAGE
- 21:05, 23 September 2007 diff hist +8 BASIC PROTOCOL 1: NAVIGATING THE WormBase HOME PAGE
- 20:53, 23 September 2007 diff hist +3,312 N INTERNET RESOURCES New page: http://wormbase.org ''The main Web site for WormBase. It is meant to be slightly less bleeding-edge than the development site, but to be maximally stable.'' http://dev.wormbase.org ''Th...
- 20:52, 23 September 2007 diff hist +18,971 N FIGURE(S) New page: '''(http://www.wormbase.org/wiki/index.php/Image:Fig_1_8_01.png) The front Web page of WormBase, showing a general database search for''zyg-1'' and the Web Site Directory'''. This page giv...
- 20:51, 23 September 2007 diff hist -26 KEY REFERENCES
- 20:51, 23 September 2007 diff hist +1,329 N KEY REFERENCES New page: Brenner, 1974. See above. ''The beginning of modern C. elegans research, this article remains vividly readable and gives a clear introduction to the goals and tactics of worm genetics.'' ...
- 20:49, 23 September 2007 diff hist +31,128 N COMMENTARY New page: '''Background Information''' WormBase contains information about the genomic sequence of ''C. elegans'', its genes and their products, and its higher-level traits such as gene expression ...
- 20:47, 23 September 2007 diff hist +3,940 N ALTERNATE PROTOCOL 1: INSTALLING AND RUNNING WormBase LOCALLY New page: All of the protocols above assume that a user will work with one of the main WormBase servers, with his or her own computer operating merely as a client. However, for people who want to us...
- 20:45, 23 September 2007 diff hist +1,623 N BASIC PROTOCOL 12: EXAMINING THE GENOMIC CONTENT OF A CLASSICAL GENETIC INTERVAL New page: Within a defined physical or genetic interval, what gene markers and SNPs are available for mapping a newly identified mutation? WormBase provides a page specifically for this problem. Ne...
- 20:44, 23 September 2007 diff hist +4,343 N BASIC PROTOCOL 11: DOWNLOADING A BATCH OF SEQUENCES New page: In analyses of the ''C. elegans'' genome, it can be useful to have such things as the complete set of 5¢ flanking regions for all known or predicted genes in ''C. elegans''. One way Wor...
- 20:42, 23 September 2007 diff hist +3,307 N BASIC PROTOCOL 10: MINING GENE DATA WITH WORMMART New page: Web pages for a single Gene, Sequence, or Protein only allow relatively small amounts of data to be analyzed at a time; yet the rise of functional genomics has made it useful and necessary...
- 20:41, 23 September 2007 diff hist +2,499 N BASIC PROTOCOL 9: FINDING SEQUENCE SIMILARITIES WITH BLAST New page: This protocol describes how to BLAST a sequence against the sequences in WormBase. Further discusion of the BLAST algorithm can be found in ''UNITS 3.3, 3.4, & 3.11''. '''''Necessary ...
- 20:40, 23 September 2007 diff hist +4,347 N BASIC PROTOCOL 8: VIEWING THE C. BRIGGSAE GENOME AND ITS SYNTENY WITH C. ELEGANS New page: At least six species in the ''Caenorhabditis'' genus have morphology and genetics close enough to ''C. elegans'' that they can be classed as its siblings (Cho et al., 2004; Kiontke et al.,...
- 20:39, 23 September 2007 diff hist 0 Searching WormBase for Information About C. elegans (Wiley) →UNIT 1.8 Searching WormBase for Information About Caenorhabditis elegans
- 20:37, 23 September 2007 diff hist +7,277 N BASIC PROTOCOL 7: USING THE GENOME BROWSER New page: All the sections of WormBase described so far consist mainly of written text. However, organisms have a text of their own, the genomic DNA sequence, within which important biological featu...
- 20:35, 23 September 2007 diff hist +1,702 N BASIC PROTOCOL 6: SEARCHING FOR GENE PRODUCTS WITH PARTICULAR SEQUENCE MOTIFS New page: One way to identify all ''C. elegans'' proteins sharing a given PFAM or InterPro motif is to check that motif's WormBase entry. One advantage of such searches is that hypertext links are g...
- 20:34, 23 September 2007 diff hist +3,030 N BASIC PROTOCOL 5: FINDING PROTEIN FEATURES New page: WormBase has, in addition to Gene and Sequence pages, Protein records that give the known or predicted details of a gene's protein product(s). '''''Necessary Resources''''' ''Hardware'' ...