User contributions
From WormBaseWiki
Jump to navigationJump to search- 20:47, 23 September 2007 diff hist +3,940 N ALTERNATE PROTOCOL 1: INSTALLING AND RUNNING WormBase LOCALLY New page: All of the protocols above assume that a user will work with one of the main WormBase servers, with his or her own computer operating merely as a client. However, for people who want to us...
- 20:45, 23 September 2007 diff hist +1,623 N BASIC PROTOCOL 12: EXAMINING THE GENOMIC CONTENT OF A CLASSICAL GENETIC INTERVAL New page: Within a defined physical or genetic interval, what gene markers and SNPs are available for mapping a newly identified mutation? WormBase provides a page specifically for this problem. Ne...
- 20:44, 23 September 2007 diff hist +4,343 N BASIC PROTOCOL 11: DOWNLOADING A BATCH OF SEQUENCES New page: In analyses of the ''C. elegans'' genome, it can be useful to have such things as the complete set of 5¢ flanking regions for all known or predicted genes in ''C. elegans''. One way Wor...
- 20:42, 23 September 2007 diff hist +3,307 N BASIC PROTOCOL 10: MINING GENE DATA WITH WORMMART New page: Web pages for a single Gene, Sequence, or Protein only allow relatively small amounts of data to be analyzed at a time; yet the rise of functional genomics has made it useful and necessary...
- 20:41, 23 September 2007 diff hist +2,499 N BASIC PROTOCOL 9: FINDING SEQUENCE SIMILARITIES WITH BLAST New page: This protocol describes how to BLAST a sequence against the sequences in WormBase. Further discusion of the BLAST algorithm can be found in ''UNITS 3.3, 3.4, & 3.11''. '''''Necessary ...
- 20:40, 23 September 2007 diff hist +4,347 N BASIC PROTOCOL 8: VIEWING THE C. BRIGGSAE GENOME AND ITS SYNTENY WITH C. ELEGANS New page: At least six species in the ''Caenorhabditis'' genus have morphology and genetics close enough to ''C. elegans'' that they can be classed as its siblings (Cho et al., 2004; Kiontke et al.,...
- 20:39, 23 September 2007 diff hist 0 Searching WormBase for Information About C. elegans (Wiley) →UNIT 1.8 Searching WormBase for Information About Caenorhabditis elegans
- 20:37, 23 September 2007 diff hist +7,277 N BASIC PROTOCOL 7: USING THE GENOME BROWSER New page: All the sections of WormBase described so far consist mainly of written text. However, organisms have a text of their own, the genomic DNA sequence, within which important biological featu...
- 20:35, 23 September 2007 diff hist +1,702 N BASIC PROTOCOL 6: SEARCHING FOR GENE PRODUCTS WITH PARTICULAR SEQUENCE MOTIFS New page: One way to identify all ''C. elegans'' proteins sharing a given PFAM or InterPro motif is to check that motif's WormBase entry. One advantage of such searches is that hypertext links are g...
- 20:34, 23 September 2007 diff hist +3,030 N BASIC PROTOCOL 5: FINDING PROTEIN FEATURES New page: WormBase has, in addition to Gene and Sequence pages, Protein records that give the known or predicted details of a gene's protein product(s). '''''Necessary Resources''''' ''Hardware'' ...
- 20:32, 23 September 2007 diff hist +2,067 N BASIC PROTOCOL 4: EXAMINING A MOLECULAR SEQUENCE IN C. ELEGANS New page: WormBase has Sequence Pages as well as Gene Pages. Sequence Pages are focused on details of the nucleotide and predicted protein-coding sequences of genes. '''''Necessary Resources''''' ...
- 20:31, 23 September 2007 diff hist +5,440 N BASIC PROTOCOL 3: EXAMINING A GENE IN C. ELEGANS New page: '''''Necessary Resources''''' ''Hardware'' A standard computer with a reasonably fast connection to the Internet (cable modem, DSL, or Ethernet recommended) ''Software'' Web brows...
- 20:29, 23 September 2007 diff hist +3,324 N BASIC PROTOCOL 2: PERFORMING A DATABASE SEARCH New page: This protocol presents how to conduct a general search of WormBase '''''Necessary Resources''''' ''Hardware'' A standard computer with a reasonably fast connection to the Internet (...
- 20:26, 23 September 2007 diff hist +2,770 N BASIC PROTOCOL 1: NAVIGATING THE WormBase HOME PAGE New page: '''''Necessary Resources''''' ''Hardware'' A standard computer with a reasonably fast connection to the Internet (cable modem, DSL, or Ethernet recommended) ''Software'' Web br...
- 20:16, 23 September 2007 diff hist +2,391 N INTRODUCTION New page: WormBase is the major public biological database for the nematode ''Caenorhabditis elegans'' (Chen et al., 2005). It is meant to be useful to any biologist who wants to use ''C. elegans'',...
- 20:15, 23 September 2007 diff hist +1,859 N Searching WormBase for Information About C. elegans (Wiley) New page: == UNIT 1.8 Searching WormBase for Information About Caenorhabditis elegans == INTRODUCTION [[BASIC_PROTOCOL_1:_NAVIGATING_THE_WormBase_HOME_PAGE|BASIC PROTOCOL 1: NAVIGATING THE Wor...
- 20:10, 23 September 2007 diff hist +920 Release notes →Statistics by release
- 20:05, 23 September 2007 diff hist -200 Release notes →Statistics by release
- 19:57, 23 September 2007 diff hist -399 Release notes →Statistics by release
- 19:48, 23 September 2007 diff hist +25,548 Release notes