Difference between revisions of "Source and maintenance of non-WBGene info"

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Revision as of 20:14, 27 September 2013

AceDB tag Postgres table Current - Nameserver nightly dump Current - WS bimonthly release Future - Geneace nightly dump Future - WS bimonthly release Use - Paper or meeting abstract gene connection Use - OA data type curation Use - OA term info Use - Dumping scripts Use -Text mining/SVM Use - Updating GSA Lexicon Comment
Variation obo_name yes yes no no yes yes no no no no Only select variations based on Method will be sent daily.
Variation public_name no yes yes no no yes yes no for Variation first pass For Variation lexicon In multiple OAs
Variation- Gene no yes yes no no no yes no no no
Variation -Reference no yes yes no no no yes no yes? no
Variation -Method
Status no yes yes no no no yes ? no no
Rearrangement no yes yes no no yes yes no no yes
Rearrangement -map no yes yes no no no yes no no no
gene_inside no yes yes no no no yes no no no
gene_outside no yes yes no no no yes no no no
Strain no yes yes no no no yes no no yes
Strain -genotype no yes yes no no no yes no no no
Strain- location no yes yes no no no yes no no no
Clone no yes yes no no yes (expr_pattern) yes no? no yes
Clone -Type no yes yes no no no yes no no no
Clone -Transgene no yes yes no no no yes no no no
Clone -strain no yes yes no no no yes no no no
Clone -general_remark no yes yes no no no yes no no no
Clone -location no yes yes no no no yes no no no
Clone -accession_number no yes yes no no no yes no no no
Clone -reference no yes yes no no no yes no no no
Transgene trp_name no no no no no yes yes yes no no
Transgene public_name trp_publicname no no no no no yes yes yes yes yes
Transgene synonym trp_synonym no no no no no yes yes yes no no
Transgene Summary trp_summary no no no no no no yes yes no no
Transgene paper trp_paper no no no no no no yes yes yes? no