Difference between revisions of "Software for nematode research"
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*[http://www.bcgsc.ca/gc/bomge/sockeye/ Sockeye Genome Browser] | *[http://www.bcgsc.ca/gc/bomge/sockeye/ Sockeye Genome Browser] | ||
*[http://genome.wustl.edu/genome/celegans/celegans_snp.cgi WUSTL SNP site] | *[http://genome.wustl.edu/genome/celegans/celegans_snp.cgi WUSTL SNP site] | ||
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| + | [[Category:Curation]] | ||
Latest revision as of 22:43, 16 August 2010
WormBase makes use of the following open-source software projects:
- AcePerl
- Generic Model Organism Database Project (GMOD)
- BioPerl
- ACeDB - The database engine that drives WormBase
- MySQL
- Textpresso - A text mining engine that powers the literature search
- Web Resources for C. elegans - WormBook's WormMethod chapter by Raymond Lee containing core web resources for C. elegans research
- Motif Search Search for DNA or protein motifs in C. elegans genome.
- Profile Search Search for co-expressed genes using C. elegans microarray data.
- GO Mine Analyze frequency of GO terms in a list of genes or microarray probes.
- Microarray Data Download Download microarray data available in WormBase.
- Converting Coordinates between releases Tool to help transform the coordinate of GFF files from one release to another
- Mapped Transgenes List of transgenes with known genomic locations.
- Tissue Specific Transgene Markers List of transgenes published as tissue specific markers.
- Balancers Table of Balancers from WormBook Chapter Genetic Balancers by Mark L. Edgley, David L. Baillie, Donald L. Riddle, and Ann M. Rose
