Difference between revisions of "Sample paper and data for exploring updates"
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* Anything that will diverge the database from the gff files. | * Anything that will diverge the database from the gff files. | ||
− | ==Data Types to Update | + | ==Data Types to Update== |
*Gene | *Gene |
Revision as of 17:05, 18 March 2011
Examples
Example 1: Paper describes cloning of a new gene, epg-8:
Title: The coiled-coil domain protein EPG-8 plays an essential role in the autophagy pathway in C. elegans.
Authors: Yang P; Zhang H
Journal: Autophagy
Year: 2011-02-01
Doc ID: WBPaper00037833
Data in the paper/objects to curate:
Two paper-person conncections
Paper-gene connections
Gene name - New
Variations - New, Existing
Variation Phenotype - New
Concise description - New
Gene Ontology Annotations - New
Expression Pattern - New
Gene Regulation - New
Example 2: Paper describes molecular cloning of an existing locus, lin-56:
Title: The LIN-15A and LIN-56 Transcriptional Regulators Interact to Negatively Regulate EGF/Ras Signaling in Caenorhabditis elegans Vulval Cell-fate Determination.
Authors: Davison EM; Saffer AM; Huang LS; Demodena J; Sternberg PW; Horvitz HR
Journal: Genetics
Year: 2010-12-31
Doc ID: WBPaper00037906
Data in the new paper/objects to curate:
Six paper-person connections - New
Gene-Sequence Connection - Merge two WBGenes? WBGene00003038 (lin-56) and WBGene00014059 (ZK673.3)
If a merger and obsoletion, move objects to appropriate gene page?
Five paper-gene connections
Concise descriptions - Update both lin-56 and ZK673.3? Dependent upon merger status. ZK673.3 would be an update, lin-56 would be new.
Gene Ontology Annotations - New
Expression Patterns - New
Gene Regulation - New
Genetic Interactions - New
Physical Interactions - Y2H - New
Variations - New and Existing, Sequence
Rearrangements - Existing
Variation Phenotypes
Antibodies - New
Issues to watch out for
- Anything that will diverge the database from the gff files.
Data Types to Update
- Gene
- Person
- Paper
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