Difference between revisions of "Sample paper and data for exploring updates"

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Data in the new paper and objects affected:
+
Data in the new paper/objects to curate:
  
 
Six paper-person connections - New
 
Six paper-person connections - New
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Concise descriptions - Update both lin-56 and ZK673.3?  Dependent upon merger status.  ZK673.3 would be an update, lin-56 would be new.
 
Concise descriptions - Update both lin-56 and ZK673.3?  Dependent upon merger status.  ZK673.3 would be an update, lin-56 would be new.
  
Gene Ontology Annotations
+
Gene Ontology Annotations - New
  
Expression Patterns
+
Expression Patterns - New
  
Gene Regulation
+
Gene Regulation - New
  
Genetic Interactions
+
Genetic Interactions - New
  
Physical Interactions - Y2H
+
Physical Interactions - Y2H - New
  
 
Variations - New and Existing, Sequence
 
Variations - New and Existing, Sequence
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Variation Phenotypes
 
Variation Phenotypes
  
Antibodies
+
Antibodies - New
 +
 
 +
 
 +
'''Example 2: Paper describes cloning of a new gene, epg-8:'''
 +
 
 +
Title: The coiled-coil domain protein EPG-8 plays an essential role in the autophagy pathway in C. elegans.
 +
 
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Authors: Yang P; Zhang H
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 +
Journal: Autophagy
 +
 
 +
Year: 2011-02-01
 +
 
 +
Doc ID: WBPaper00037833
 +
 
 +
 
 +
Data in the paper/objects to curate:
 +
 
 +
Two paper-person conncections
 +
 
 +
Gene name - New
 +
 
 +
Variations - New, Existing
 +
 
 +
Variation Phenotype - New
 +
 
 +
Concise description - New
 +
 
 +
Gene Ontology Annotations - New
 +
 
 +
Expression Pattern - New
  
  

Revision as of 18:41, 16 March 2011

Example 1: Paper describes molecular cloning of an existing locus, lin-56:

Title: The LIN-15A and LIN-56 Transcriptional Regulators Interact to Negatively Regulate EGF/Ras Signaling in Caenorhabditis elegans Vulval Cell-fate Determination.

Authors: Davison EM; Saffer AM; Huang LS; Demodena J; Sternberg PW; Horvitz HR

Journal: Genetics

Year: 2010-12-31

Doc ID: WBPaper00037906


Data in the new paper/objects to curate:

Six paper-person connections - New

Gene-Sequence Connection - Merge two WBGenes? WBGene00003038 (lin-56) and WBGene00014059 (ZK673.3)

Five paper-gene connections

Concise descriptions - Update both lin-56 and ZK673.3? Dependent upon merger status. ZK673.3 would be an update, lin-56 would be new.

Gene Ontology Annotations - New

Expression Patterns - New

Gene Regulation - New

Genetic Interactions - New

Physical Interactions - Y2H - New

Variations - New and Existing, Sequence

Rearrangements - Existing

Variation Phenotypes

Antibodies - New


Example 2: Paper describes cloning of a new gene, epg-8:

Title: The coiled-coil domain protein EPG-8 plays an essential role in the autophagy pathway in C. elegans.

Authors: Yang P; Zhang H

Journal: Autophagy

Year: 2011-02-01

Doc ID: WBPaper00037833


Data in the paper/objects to curate:

Two paper-person conncections

Gene name - New

Variations - New, Existing

Variation Phenotype - New

Concise description - New

Gene Ontology Annotations - New

Expression Pattern - New






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