Process page mock-ups

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Notes for process pages

  • Pathway databases
    • BioCyc: Peter Karp, SRI, PathoLogic tools,
    • KEGG:
    • C. elegans specific db, Armand Leroi's, NMR-based metabolomic data using MetaShark for assigning enzyme classification
    • WikiPathways: Alex Pico, Gladstone, GenMAPP Pathway Markup Language (GPML), PathVisio
    • Reactome: Peter D'Eustachio, Lisa Matthews
    • NEMAPATH: Makedonka Mitreva, nematode.net, nonelegans
  • Visualization software
    • Cytoscape
    • GenMAPP
    • PathVisio

Processes in C. elegans

Cell death

  • [Programmed cell death: Developmental]
  • [Programmed cell death: Germ line]
  • [Necrosis]
  • [Autophagy]

Dauer arrest

  • [Regulation of dauer arrest]
  • [Dauer morphological changes]
  • [Dauer metabolism]
  • [Neuronal processes in dauer arrest]
  • [Steroids/hormones]
  • [Quiescence]

L1 arrest

Vulval development

  • [Generation of VPC's]
  • [Vulval Precursor Patterning]
  • [Generation of the adult]
  • [Anchor cell invasion]
  • [Morphogenesis of the vulva]
  • [Generation of the anchor cell: AC/UV decision]
  • [Uterine patterning: pi cell induction]
  • [Uterine patterning: uv1 induction]
  • [Patterning of adult cell types: 1° lineage]
  • [Patterning of adult cell types: Polarity of 2° lineage]

Neuronal regeneration

Neuronal migration

Molting

Cell specification

Axis formation

  • [Asymmetric cell division]
  • [Establishing polarity: A/P axis]
  • [Establishing polarity: D/V axis]
  • [Establishing polarity; L/R Axis]
  • [Maintaining polarity]

Chemosensation

  • [Chemotaxis]
  • [Oxygen sensing]
  • [Mating]
  • [Integrating signals]

Mechanosensation

Behavioral plasticity

Locomotion

  • [Pirouettes]
  • [Foraging]
  • [Taxis]

Ovulation

Egg-laying

Male Mating

  • [Mate-Finding]
  • [Response to contact]
  • [Turning]
  • [Vulval Location]
  • [Spicule protraction]
  • [Sperm Transfer]
  • [Spicule retraction]


Pathogen Response

  • [Innate Immune Response]
  • [Pathogen Avoidance]