Difference between revisions of "Process page mock-ups"

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*[Programmed cell death: Developmental]
 
*[Programmed cell death: Developmental]
 
*[Programmed cell death: Germ line]
 
*[Programmed cell death: Germ line]
 +
*[Necrosis]
 
|
 
|
−
*[Necrosis]
 
 
*[Autophagy]
 
*[Autophagy]
 
*[Cell death in hermaphrodite]
 
*[Cell death in hermaphrodite]
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*[Dauer morphological changes]
 
*[Dauer morphological changes]
 
*[Dauer metabolism]
 
*[Dauer metabolism]
 +
*[Neuronal processes in dauer arrest]
 
|
 
|
−
*[Neuronal processes in dauer arrest]
 
 
*[Steroids/hormones]
 
*[Steroids/hormones]
 
*[Quiescence]
 
*[Quiescence]
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*[Vulval Precursor Patterning]
 
*[Vulval Precursor Patterning]
 
*[Generation of the adult]
 
*[Generation of the adult]
 +
*[Anchor cell invasion]
 
|
 
|
−
*[Anchor cell invasion]
 
 
*[Morphogenesis of the vulva]
 
*[Morphogenesis of the vulva]
 
*[Generation of the anchor cell: AC/UV decision]
 
*[Generation of the anchor cell: AC/UV decision]
−
|
 
 
*[Uterine patterning: pi cell induction]
 
*[Uterine patterning: pi cell induction]
 
*[Uterine patterning: uv1 induction]
 
*[Uterine patterning: uv1 induction]
 +
|
 
*[Patterning of adult cell types: 1° lineage]
 
*[Patterning of adult cell types: 1° lineage]
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*[Patterning of adult cell types: Polarity of 2° lineage]
 
*[Patterning of adult cell types: Polarity of 2° lineage]
 
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*[Establishing polarity: A/P axis]
 
*[Establishing polarity: A/P axis]
 
*[Establishing polarity: D/V axis]
 
*[Establishing polarity: D/V axis]
 +
*[Establishing polarity; L/R Axis]
 
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|
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*[Establishing polarity; L/R Axis]
 
 
*[Maintaining polarity]
 
*[Maintaining polarity]
 
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*[Oxygen sensing]
 
*[Oxygen sensing]
 
*[Mating]
 
*[Mating]
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*[Integrating signals]
 
*[Integrating signals]
 
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*[Response to contact]
 
*[Response to contact]
 
*[Turning]
 
*[Turning]
 +
*[Vulval Location]
 
|
 
|
−
*[Vulval Location]
 
 
*[Spicule protraction]
 
*[Spicule protraction]
 
*[Sperm Transfer]
 
*[Sperm Transfer]
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*[Spicule retraction]
 
*[Spicule retraction]
 
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Revision as of 19:59, 24 July 2009

back to Caltech SOPs

Notes for process pages

  • Pathway databases
    • BioCyc: Peter Karp, SRI, PathoLogic tools,
    • KEGG:
    • C. elegans specific db, Armand Leroi's, NMR-based metabolomic data using MetaShark for assigning enzyme classification
    • WikiPathways: Alex Pico, Gladstone, GenMAPP Pathway Markup Language (GPML), PathVisio
    • Reactome: Peter D'Eustachio, Lisa Matthews
    • NEMAPATH: Makedonka Mitreva, nematode.net, nonelegans
  • Visualization software
    • Cytoscape
    • GenMAPP
    • PathVisio

Processes in C. elegans

Cell Division

  • [Cell division in male]
  • [Cell division in hermaphrodite]

Cell death

  • [Programmed cell death: Developmental]
  • [Programmed cell death: Germ line]
  • [Necrosis]
  • [Autophagy]
  • [Cell death in hermaphrodite]


Dauer formation/arrest

  • [Regulation of dauer arrest]
  • [Dauer morphological changes]
  • [Dauer metabolism]
  • [Neuronal processes in dauer arrest]
  • [Steroids/hormones]
  • [Quiescence]
  • [Exit from dauer stage]

L1 development

  • [L1 arrest]

Tissue morphogenesis

  • [Embryonic mesendoderm development]
  • [Muscle morphogenesis]

Organ development

  • [Pharynx development]
  • [Gonad development]
  • [Duct development]
  • [Muscle development]

Germ line development

Spermatogenesis

Oogenesis

Sex determination

Dosage compensation

Male-specific development

  • [Hook Equivalence Group development]
  • [Spicule development]
  • [Male muscle development]


Vulval development

  • Generation of VPC's
  • [Vulval Precursor Patterning]
  • [Generation of the adult]
  • [Anchor cell invasion]
  • [Morphogenesis of the vulva]
  • [Generation of the anchor cell: AC/UV decision]
  • [Uterine patterning: pi cell induction]
  • [Uterine patterning: uv1 induction]
  • [Patterning of adult cell types: 1° lineage]
  • [Patterning of adult cell types: Polarity of 2° lineage]

Cell migration

  • [Neuronal migration]
  • [Sex Myoblast positioning]
  • [DTC migration]
  • [LC migration]

Neuronal regeneration

Molting

Cell specification and differentiation

  • [P11/P12 specification]
  • [Embryonic blastomere specification]
  • [Cell differentiation in hermaphrodite]
  • [Cell differentiation in male]

Axis formation

  • [Asymmetric cell division]
  • [Establishing polarity: A/P axis]
  • [Establishing polarity: D/V axis]
  • [Establishing polarity; L/R Axis]
  • [Maintaining polarity]

Chemosensation

  • [Chemotaxis]
  • [Oxygen sensing]
  • [Mating]
  • [Integrating signals]

Mechanosensation

Synaptic transmission

Behavioral plasticity

  • [Habituation]
  • [Adaptation]

Locomotion

  • [Pirouettes]
  • [Foraging]
  • [Taxis]

Feeding

  • [Pharyngeal pumping]
  • [Foraging]

Defecation

  • [Defecation cycle]

Ovulation

  • [Egg-laying]
  • [Egg-laying cycle]]

Male Mating

  • [Mate-Finding]
  • [Response to contact]
  • [Turning]
  • [Vulval Location]
  • [Spicule protraction]
  • [Sperm Transfer]
  • [Spicule retraction]

Sleep

Pathogen Response

  • [Innate Immune Response]
  • [Pathogen Avoidance]
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