Difference between revisions of "Process page mock-ups"

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<h1>Programmed Cell Death in ''C. elegans''</h1>
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=Processes in ''C. elegans''=
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<h2>[http://www.wormbook.org/chapters/www_programcelldeath/programcelldeath.html Developmental Cell Death in ''C. elegans'']</h2>
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 +
==[[Cell death]]==
 +
[Programmed cell death: Developmental]
 +
[Programmed cell death: Germ line]
 +
[Necrosis]
 +
[Autophagy]
 +
 
 +
==[[Dauer arrest]]==
 +
[Regulation of dauer arrest]
 +
[Dauer morphological changes]
 +
[Dauer metabolism]
 +
[Neuronal processes in dauer arrest]
 +
[Steroids/hormones]
 +
[Quiescence]
 +
 
 +
==[[Vulval development]]==
 +
[Generation of VPC's]
 +
[Vulval Precursor Patterning]
 +
[Generation of the adult]
 +
[Anchor cell invasion]
 +
[Morphogenesis of the vulva]
 +
[Generation of the anchor cell: AC/UV decision]
 +
[Uterine patterning: pi cell induction]
 +
[Uterine patterning: uv1 induction]
 +
[Patterning of adult cell types: 1° lineage]
 +
[Patterning of adult cell types: Polarity of 2° lineage]
 +
 
 +
==[[Neuronal regeneration]]==
 +
 
 +
==[[Neuronal migration]]==
 +
 
 +
==[[Molting]]==
 +
 
 +
==[[Cell specification]]==
 +
 
 +
==[[Axis formation]]==
 +
[Asymmetric cell division] [Establishing polarity: A/P axis] [Establishing polarity: D/V axis] [Establishing polarity; L/R Axis] [Maintaining polarity]
 +
 
 +
==[[Chemosensation]]==
 +
[Chemotaxis] [Oxygen sensing] [Mating] [Integrating signals]
 +
 
 +
==[[Behavioral plasticity]]==
 +
 
 +
 
 +
==[[Locomotion]]==
 +
[Pirouettes] [Foraging] [Taxis]
 +
 
 +
----
 +
 
 +
=Cell death=
 +
[Programmed cell death: Developmental]
 +
[Programmed cell death: Germ line]
 +
[Necrosis]
 +
[Autophagy]
 +
 
 +
 
 +
==Programmed Cell Death: Developmental==
 +
'''[http://www.wormbook.org/chapters/www_programcelldeath/programcelldeath.html Developmental Cell Death in ''C. elegans'']'''
  
 
[[image:Pcdfig2_s.png]]
 
[[image:Pcdfig2_s.png]]
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----
 
----
  
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<h2>Steps and processes</h2>   
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<h3>Steps and processes</h3>   
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<h3>[[Specification]]</h3>
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<h4>[[Specification]]</h4>
 
"...a cell is instructed to undergo programmed cell death..."
 
"...a cell is instructed to undergo programmed cell death..."
 
**''[http://www.wormbase.org/db/gene/gene?name=WBGene00001324;class=Gene eor-1]''
 
**''[http://www.wormbase.org/db/gene/gene?name=WBGene00001324;class=Gene eor-1]''
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**''[http://www.wormbase.org/db/gene/gene?name=WBGene00000468;class=Gene ces-1]''
 
**''[http://www.wormbase.org/db/gene/gene?name=WBGene00000468;class=Gene ces-1]''
  
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<h3>[[Killing Phase]]</h3>
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<h4>[[Killing Phase]]</h4>
 
"...the apoptotic program is activated in the cell instructed to die..."
 
"...the apoptotic program is activated in the cell instructed to die..."
  
−
<h3>[[Execution Phase]]</h3>
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<h4>[[Execution Phase]]</h4>
 
"...cells are dismantled and subsequently engulfed by neighboring cells..."
 
"...cells are dismantled and subsequently engulfed by neighboring cells..."
  
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*[[Corpse Engulfment Pathway]]
 
*[[Corpse Engulfment Pathway]]
  
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<h3>Cells</h3>  
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<h3>Cells/Tissues</h3>  
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*'''links to anatomy pages'''
 
 
[http://www.wormbase.org/db/misc/etree?name=cells_that_die;class=Cell_group;view=expand cells that die]
 
[http://www.wormbase.org/db/misc/etree?name=cells_that_die;class=Cell_group;view=expand cells that die]
 
*[http://www.wormbase.org/db/misc/etree?name=embryonic_death;class=Cell_group;view=expand embryonic death]
 
*[http://www.wormbase.org/db/misc/etree?name=embryonic_death;class=Cell_group;view=expand embryonic death]
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**[http://www.wormbase.org/db/misc/etree?name=death_in_herms;class=Cell_group;view=expand death in hermaphrodites]
 
**[http://www.wormbase.org/db/misc/etree?name=death_in_herms;class=Cell_group;view=expand death in hermaphrodites]
 
**[http://www.wormbase.org/db/misc/etree?name=death_in_males;class=Cell_group;view=expand death in males]
 
**[http://www.wormbase.org/db/misc/etree?name=death_in_males;class=Cell_group;view=expand death in males]
 +
''map onto animal/link to anatomy pages''
  
  
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<h2>Cell programs</h2>
+
<h3>Cell programs </h3>
 
*division
 
*division
 
*differentiation
 
*differentiation
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*'''[http://www.biocyc.org biocyc.org pathway tools]'''
 
*'''[http://www.biocyc.org biocyc.org pathway tools]'''
  
−
<h3>Map onto animal</h3>
 
  
−
<h2>[http://www.wormbook.org/chapters/www_germlinesurvival/germlinesurvival.html Germline Cell Death in ''C. elegans'']</h2>
+
 
 +
==Programmed Cell Death: Germ line==
 +
'''[http://www.wormbook.org/chapters/www_germlinesurvival/germlinesurvival.html Germline Cell Death in ''C. elegans'']'''
  
  
 
----
 
----

Revision as of 01:26, 30 May 2009

Processes in C. elegans

Cell death

[Programmed cell death: Developmental] [Programmed cell death: Germ line] [Necrosis] [Autophagy]

Dauer arrest

[Regulation of dauer arrest] [Dauer morphological changes] [Dauer metabolism] [Neuronal processes in dauer arrest] [Steroids/hormones] [Quiescence]

Vulval development

[Generation of VPC's] [Vulval Precursor Patterning] [Generation of the adult] [Anchor cell invasion] [Morphogenesis of the vulva] [Generation of the anchor cell: AC/UV decision] [Uterine patterning: pi cell induction] [Uterine patterning: uv1 induction] [Patterning of adult cell types: 1° lineage] [Patterning of adult cell types: Polarity of 2° lineage]

Neuronal regeneration

Neuronal migration

Molting

Cell specification

Axis formation

[Asymmetric cell division] [Establishing polarity: A/P axis] [Establishing polarity: D/V axis] [Establishing polarity; L/R Axis] [Maintaining polarity]

Chemosensation

[Chemotaxis] [Oxygen sensing] [Mating] [Integrating signals]

Behavioral plasticity

Locomotion

[Pirouettes] [Foraging] [Taxis]

Cell death

[Programmed cell death: Developmental] [Programmed cell death: Germ line] [Necrosis] [Autophagy]


Programmed Cell Death: Developmental

Developmental Cell Death in C. elegans

Pcdfig2 s.png

Steps and processes

Specification

"...a cell is instructed to undergo programmed cell death..."

Killing Phase

"...the apoptotic program is activated in the cell instructed to die..."

Execution Phase

"...cells are dismantled and subsequently engulfed by neighboring cells..."

Cells/Tissues

cells that die

map onto animal/link to anatomy pages


Cell programs

  • division
  • differentiation
  • death
  • division in male
  • differentiation in hermaphrodite
  • differentiation in male
  • death in hermaphrodite
  • division in hermaphrodite

Pathways


Programmed Cell Death: Germ line

Germline Cell Death in C. elegans


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