Pipeline for identifying papers with drugs

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  • Initial plan was to use the 'molecules' list to identify papers with drugs, output was overloaded with papers with biomolecules, does not work for drugs.
  • Building the drug lexicon: The following sources were used:
  • Antifungal agents: http://en.wikipedia.org/wiki/Antifungal_medication
  • Antibiotics--antimicrobial, anti-fungal, anti-viral, anti-parasitic and anti-tumor agents:


  • Antiparasitic drugs--Aldicarb, Ivermectin, Levamisole
  • Anti-depressants, anti-depressants, anticonvulsants, anti-psychotic and psycho-active drugs:

http://en.wikipedia.org/wiki/List_of_antidepressants http://www.nimh.nih.gov/health/publications/mental-health-medications/alphabetical-list-of-medications.shtml http://en.wikipedia.org/wiki/Psychoactive_drug (Table under the heading Affected neurotransmitter systems, capture columns 'Classification' and 'Examples')


Exceptions: --Skip pure numbers Resveratrol, Gingko biloba