Difference between revisions of "Pipeline for identifying papers with drugs"
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*Initial plan was to use the 'molecules' list to identify papers with drugs, output was overloaded with papers with biomolecules, does not work for drugs. | *Initial plan was to use the 'molecules' list to identify papers with drugs, output was overloaded with papers with biomolecules, does not work for drugs. | ||
− | *Building the drug lexicon: | + | *Building the drug lexicon: The following sources were used: |
− | The following | ||
*Antifungal agents: http://en.wikipedia.org/wiki/Antifungal_medication | *Antifungal agents: http://en.wikipedia.org/wiki/Antifungal_medication | ||
*Antibiotics--antimicrobial, anti-fungal, anti-viral, anti-parasitic and anti-tumor agents: | *Antibiotics--antimicrobial, anti-fungal, anti-viral, anti-parasitic and anti-tumor agents: | ||
− | |||
http://antibiotics.toku-e.com/antimicrobial | http://antibiotics.toku-e.com/antimicrobial | ||
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*Antiparasitic drugs--Aldicarb, Ivermectin, Levamisole | *Antiparasitic drugs--Aldicarb, Ivermectin, Levamisole | ||
*Anti-depressants, anti-depressants, anticonvulsants, anti-psychotic and psycho-active drugs: | *Anti-depressants, anti-depressants, anticonvulsants, anti-psychotic and psycho-active drugs: | ||
http://en.wikipedia.org/wiki/List_of_antidepressants | http://en.wikipedia.org/wiki/List_of_antidepressants | ||
− | |||
http://www.nimh.nih.gov/health/publications/mental-health-medications/alphabetical-list-of-medications.shtml | http://www.nimh.nih.gov/health/publications/mental-health-medications/alphabetical-list-of-medications.shtml | ||
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http://en.wikipedia.org/wiki/Psychoactive_drug | http://en.wikipedia.org/wiki/Psychoactive_drug | ||
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(Table under the heading Affected neurotransmitter systems, capture columns 'Classification' and 'Examples') | (Table under the heading Affected neurotransmitter systems, capture columns 'Classification' and 'Examples') | ||
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*Anaesthics: http://en.wikipedia.org/wiki/Anesthetic | *Anaesthics: http://en.wikipedia.org/wiki/Anesthetic | ||
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*Anticonvulsants--Ethosuximide, Arimethadione | *Anticonvulsants--Ethosuximide, Arimethadione | ||
*Alkaloid drugs: http://en.wikipedia.org/wiki/Alkaloid | *Alkaloid drugs: http://en.wikipedia.org/wiki/Alkaloid | ||
*Immunosuppressants: http://en.wikipedia.org/wiki/Immunosuppressive_drug | *Immunosuppressants: http://en.wikipedia.org/wiki/Immunosuppressive_drug | ||
http://www.surgeryencyclopedia.com/Fi-La/Immunosuppressant-Drugs.html | http://www.surgeryencyclopedia.com/Fi-La/Immunosuppressant-Drugs.html | ||
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*Nutritional supplements: http://www.rxlist.com/supplements/alpha_a.htm | *Nutritional supplements: http://www.rxlist.com/supplements/alpha_a.htm | ||
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*For the purpose of the lexicon:Use generic name for drug name, trade name will be used as synonymn. | *For the purpose of the lexicon:Use generic name for drug name, trade name will be used as synonymn. | ||
Revision as of 19:30, 6 August 2012
- Initial plan was to use the 'molecules' list to identify papers with drugs, output was overloaded with papers with biomolecules, does not work for drugs.
- Building the drug lexicon: The following sources were used:
- Antifungal agents: http://en.wikipedia.org/wiki/Antifungal_medication
- Antibiotics--antimicrobial, anti-fungal, anti-viral, anti-parasitic and anti-tumor agents:
http://antibiotics.toku-e.com/antimicrobial
- Antiparasitic drugs--Aldicarb, Ivermectin, Levamisole
- Anti-depressants, anti-depressants, anticonvulsants, anti-psychotic and psycho-active drugs:
http://en.wikipedia.org/wiki/List_of_antidepressants http://www.nimh.nih.gov/health/publications/mental-health-medications/alphabetical-list-of-medications.shtml http://en.wikipedia.org/wiki/Psychoactive_drug (Table under the heading Affected neurotransmitter systems, capture columns 'Classification' and 'Examples')
- Anaesthics: http://en.wikipedia.org/wiki/Anesthetic
- Anticonvulsants--Ethosuximide, Arimethadione
- Alkaloid drugs: http://en.wikipedia.org/wiki/Alkaloid
- Immunosuppressants: http://en.wikipedia.org/wiki/Immunosuppressive_drug
http://www.surgeryencyclopedia.com/Fi-La/Immunosuppressant-Drugs.html
- Nutritional supplements: http://www.rxlist.com/supplements/alpha_a.htm
- For the purpose of the lexicon:Use generic name for drug name, trade name will be used as synonymn.
Exceptions: --Skip pure numbers Resveratrol, Gingko biloba