Difference between revisions of "Pipeline for identifying papers with drugs"

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(Created page with '*Initial plan was to use the 'molecules' list to identify papers with drugs, output was overloaded with papers with biomolecules, does not work for drugs. *Building the drug lexi…')
 
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*Initial plan was to use the 'molecules' list to identify papers with drugs, output was overloaded with papers with biomolecules, does not work for drugs.
 
*Initial plan was to use the 'molecules' list to identify papers with drugs, output was overloaded with papers with biomolecules, does not work for drugs.
*Building the drug lexicon:
+
*Building the drug lexicon: The following sources were used:
The following lists were used:
 
 
*Antifungal agents: http://en.wikipedia.org/wiki/Antifungal_medication
 
*Antifungal agents: http://en.wikipedia.org/wiki/Antifungal_medication
 
*Antibiotics--antimicrobial, anti-fungal, anti-viral, anti-parasitic and anti-tumor agents:
 
*Antibiotics--antimicrobial, anti-fungal, anti-viral, anti-parasitic and anti-tumor agents:
 
 
http://antibiotics.toku-e.com/antimicrobial
 
http://antibiotics.toku-e.com/antimicrobial
 
 
*Antiparasitic drugs--Aldicarb, Ivermectin, Levamisole
 
*Antiparasitic drugs--Aldicarb, Ivermectin, Levamisole
 
*Anti-depressants, anti-depressants, anticonvulsants, anti-psychotic and psycho-active drugs:  
 
*Anti-depressants, anti-depressants, anticonvulsants, anti-psychotic and psycho-active drugs:  
 
http://en.wikipedia.org/wiki/List_of_antidepressants
 
http://en.wikipedia.org/wiki/List_of_antidepressants
 
 
http://www.nimh.nih.gov/health/publications/mental-health-medications/alphabetical-list-of-medications.shtml
 
http://www.nimh.nih.gov/health/publications/mental-health-medications/alphabetical-list-of-medications.shtml
 
 
http://en.wikipedia.org/wiki/Psychoactive_drug
 
http://en.wikipedia.org/wiki/Psychoactive_drug
 
 
(Table under the heading Affected neurotransmitter systems, capture columns 'Classification' and 'Examples')
 
(Table under the heading Affected neurotransmitter systems, capture columns 'Classification' and 'Examples')
 
 
*Anaesthics: http://en.wikipedia.org/wiki/Anesthetic
 
*Anaesthics: http://en.wikipedia.org/wiki/Anesthetic
 
 
*Anticonvulsants--Ethosuximide, Arimethadione
 
*Anticonvulsants--Ethosuximide, Arimethadione
 
*Alkaloid drugs: http://en.wikipedia.org/wiki/Alkaloid
 
*Alkaloid drugs: http://en.wikipedia.org/wiki/Alkaloid
 
*Immunosuppressants: http://en.wikipedia.org/wiki/Immunosuppressive_drug
 
*Immunosuppressants: http://en.wikipedia.org/wiki/Immunosuppressive_drug
 
http://www.surgeryencyclopedia.com/Fi-La/Immunosuppressant-Drugs.html
 
http://www.surgeryencyclopedia.com/Fi-La/Immunosuppressant-Drugs.html
 
 
*Nutritional supplements: http://www.rxlist.com/supplements/alpha_a.htm
 
*Nutritional supplements: http://www.rxlist.com/supplements/alpha_a.htm
 
 
*For the purpose of the lexicon:Use generic name for drug name, trade name will be used as synonymn.
 
*For the purpose of the lexicon:Use generic name for drug name, trade name will be used as synonymn.
  

Revision as of 19:30, 6 August 2012

  • Initial plan was to use the 'molecules' list to identify papers with drugs, output was overloaded with papers with biomolecules, does not work for drugs.
  • Building the drug lexicon: The following sources were used:
  • Antifungal agents: http://en.wikipedia.org/wiki/Antifungal_medication
  • Antibiotics--antimicrobial, anti-fungal, anti-viral, anti-parasitic and anti-tumor agents:

http://antibiotics.toku-e.com/antimicrobial

  • Antiparasitic drugs--Aldicarb, Ivermectin, Levamisole
  • Anti-depressants, anti-depressants, anticonvulsants, anti-psychotic and psycho-active drugs:

http://en.wikipedia.org/wiki/List_of_antidepressants http://www.nimh.nih.gov/health/publications/mental-health-medications/alphabetical-list-of-medications.shtml http://en.wikipedia.org/wiki/Psychoactive_drug (Table under the heading Affected neurotransmitter systems, capture columns 'Classification' and 'Examples')

http://www.surgeryencyclopedia.com/Fi-La/Immunosuppressant-Drugs.html

Exceptions: --Skip pure numbers Resveratrol, Gingko biloba