Phenotype micropublications

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For Phenotype-micropublications submissions we will modify the existing Allele-phenotype submission form. The underlying CGI will remain the same but the Allele-phenotype and the Phenotype-micropublications form will have 2 separate displays.

Changes to the form

Changes to the current Allele-phenotype form located here: http://www.wormbase.org/submissions/phenotype.cgi: Expression micropublication form here: http://mangolassi.caltech.edu/~azurebrd/cgi-bin/forms/expr_micropub.cgi

Remove:

  • PubMedID -submissions are novel data, do not have a paper attached. Submissions will get their own WBPaperID
  • Click here to review your publications and see which are in need of phenotype curation -this field not necessary in the micropublication form

Add -below 'Your e-mail address' field:

  • co-authors -> autocomplete on people
  • Laboratory -> autocomplete on labs -> mandatory
  • Funding -> free text -> mandatory
  • Species -> autocomplete on species?
  • Choose an image -> Browse button, only jpg accepted -> mandatory
  • Description -> big text (small box that becomes big upon clicking)

Change:

  • Genetic perturbation(s) in -> Perturbation(s)
  • this text: 'PLEASE NOTE: All genetic perturbations above will be annotated to all phenotypes entered below. For separate perturbation-phenotype annotations, please perform separate submissions, or use the WormBase Phenotype Worksheet (linked above).'

in this: 'PLEASE NOTE: All perturbations above will be annotated to all phenotypes entered below. For separate perturbation-phenotype annotations, please perform separate submissions, or use the WormBase Phenotype Worksheet (linked above).'

Add -below 'Transgene' field: Molecule -> autocomplete on molecules

Add -above 'Optional'

  • Disclaimer -> mandatory checkbox like in the Expression micropublication form: I declare to the best of my knowledge that the experiment is reproducible.

Model Changes

RNAi

in ?RNAi class add: Supporting_data Picture ?Picture XREF RNAi

in ?Picture class add RNAi ?RNAi XREF Picture

#Phenotype_info

In #Phenotype_info add Picture ?Picture (can we put Xrefs to the hash? XREF #Phenotype_info)

In ?Picture add ---

Changes to the OAs

RNAi OA

Add a Picture field in tab 4 between 'History name' and 'Movie'

Phenotype OA

Add a Picture field

Title?

Shall we add a 'Title' field or shall we autogenerate titles with the info that are entered in different fields?