Difference between revisions of "Phenotype2GO Analysis"
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| − | ! Gene Name !! Phenotype2GO Annotation !! Evidence Code !! Experiment !! Reference !! Manual GO Annotation !! Evidence Code !! Comment !! Recommend Keep Phenotype2GO Annotation? | + | ! Gene Name !! Phenotype2GO Annotation !! Evidence Code !! Experiment !! Reference !! Manual GO Annotation !! Evidence Code !! Comment !! Recommend Keep Phenotype2GO Annotation? || Class of P2GO |
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| − | | met-1 || locomotion (GO:0040011) || IMP || RNAi || 26635, Gottschalk, et al., 2005 || no manual GO annotation || || role of met-1 not clear from this paper, but as a histone methyltransferase probably related to gene expression; contrast physiological process vs developmental process || No | + | | met-1 || locomotion (GO:0040011) || IMP || RNAi || 26635, Gottschalk, et al., 2005 || no manual GO annotation || || role of met-1 not clear from this paper, but as a histone methyltransferase probably related to gene expression; contrast physiological process vs developmental process || No || Possible downstream effect |
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| − | | smg-8 || locomotion (GO:0040011) || IMP || RNAi || 37111 || nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184) || IGI || smg-8 encodes a novel protein | + | | smg-8 || locomotion (GO:0040011) || IMP || RNAi || 37111 || nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184) || IGI || smg-8 encodes a novel protein; manual annotation still needs to be added; affect on locomotion apparently a result of unc-54 transcript stabilization || Phenotype used as output for more general cellular process |
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| mes-4 || determination of adult lifespan (GO:0008430) || IMP || RNAi || 33449 || no GO annotation here? expt about germline fates || | | mes-4 || determination of adult lifespan (GO:0008430) || IMP || RNAi || 33449 || no GO annotation here? expt about germline fates || | ||
Revision as of 21:39, 6 March 2013
Named Genes with Phenotype2GO-Based Annotations
| Gene Name | Phenotype2GO Annotation | Evidence Code | Experiment | Reference | Manual GO Annotation | Evidence Code | Comment | Recommend Keep Phenotype2GO Annotation? | Class of P2GO |
|---|---|---|---|---|---|---|---|---|---|
| met-1 | locomotion (GO:0040011) | IMP | RNAi | 26635, Gottschalk, et al., 2005 | no manual GO annotation | role of met-1 not clear from this paper, but as a histone methyltransferase probably related to gene expression; contrast physiological process vs developmental process | No | Possible downstream effect | |
| smg-8 | locomotion (GO:0040011) | IMP | RNAi | 37111 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184) | IGI | smg-8 encodes a novel protein; manual annotation still needs to be added; affect on locomotion apparently a result of unc-54 transcript stabilization | Phenotype used as output for more general cellular process | |
| mes-4 | determination of adult lifespan (GO:0008430) | IMP | RNAi | 33449 | no GO annotation here? expt about germline fates | ||||
| gld-3 | apoptosis (obsolete) | IMP | RNAi | 38381 | maybe a germ cell development annotation? | IMP | |||
| fem-3 | embryonic development ending in birth or egg hatching (GO:0009792) | IMP | RNAi | 5599 | large-scale screen | small-scale experiment supports this but is not yet annotated (35459) |
