Difference between revisions of "Phenotype2GO Analysis"

From WormBaseWiki
Jump to navigationJump to search
Line 5: Line 5:
 
{| class="wikitable"
 
{| class="wikitable"
 
|-
 
|-
! Gene Name !! Phenotype2GO Annotation !! Evidence Code !! Experiment !! Reference !! Manual GO Annotation !! Evidence Code !! Comment !! Recommend keep Phenotype2GO Annotation?
+
! Gene Name !! Phenotype2GO Annotation !! Evidence Code !! Experiment !! Reference !! Manual GO Annotation !! Evidence Code !! Comment !! Recommend Keep Phenotype2GO Annotation?
 
|-
 
|-
 
| met-1 || locomotion (GO:0040011) || IMP || RNAi || 26635, Gottschalk, et al., 2005 ||  no manual GO annotation || || role of met-1 not clear from this paper, but as a histone methyltransferase probably related to gene expression; contrast physiological process vs developmental process || No
 
| met-1 || locomotion (GO:0040011) || IMP || RNAi || 26635, Gottschalk, et al., 2005 ||  no manual GO annotation || || role of met-1 not clear from this paper, but as a histone methyltransferase probably related to gene expression; contrast physiological process vs developmental process || No

Revision as of 21:26, 6 March 2013

Named Genes with Phenotype2GO-Based Annotations

Gene Name Phenotype2GO Annotation Evidence Code Experiment Reference Manual GO Annotation Evidence Code Comment Recommend Keep Phenotype2GO Annotation?
met-1 locomotion (GO:0040011) IMP RNAi 26635, Gottschalk, et al., 2005 no manual GO annotation role of met-1 not clear from this paper, but as a histone methyltransferase probably related to gene expression; contrast physiological process vs developmental process No
smg-8 locomotion (GO:0040011) IMP RNAi 37111 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184) IGI
mes-4 determination of adult lifespan (GO:0008430) IMP RNAi 33449 no GO annotation here? expt about germline fates
gld-3 apoptosis (obsolete) IMP RNAi 38381 maybe a germ cell development annotation? IMP
fem-3 embryonic development ending in birth or egg hatching (GO:0009792) IMP RNAi 5599 large-scale screen small-scale experiment supports this but is not yet annotated (35459)