Difference between revisions of "Phasing out the manual annotations"

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Examples: fbxb genes, fbxa genes, a few sdz genes, number of unnamed (uncloned?) genes, total 295 genes
 
Examples: fbxb genes, fbxa genes, a few sdz genes, number of unnamed (uncloned?) genes, total 295 genes
  
*Those genes with the description:
+
*Those genes with the description (most from 2004-06-17)
  
 
  The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion')
 
  The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion')

Revision as of 19:39, 18 February 2016

The plan is to look at the groups of annotations by date and/or their text in order to phase them out from the concise descriptions dump that is submitted for upload, and possibly from Postgres as well.

Note: These are only the Description Type 'Concise_descritpion', not looking at Provisional descriptions'.

  • Those that have a Date last updated date of 2004-06-17 in the OA, 3075 genes
  • Those genes that have the following description (also from 2004-06-17)
This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein
interactions either with homologs of yeast Skp-1p or with other proteins.

Examples: fbxb genes, fbxa genes, a few sdz genes, number of unnamed (uncloned?) genes, total 295 genes

  • Those genes with the description (most from 2004-06-17)
The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion')
domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in  
wormpep77).

Examples: pqn genes, some abu genes, some unnamed (uncloned?) genes, total 72 genes