Difference between revisions of "Phasing out the manual annotations"
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The plan is to look at the groups of annotations by date and/or their text in order to phase them out from the concise descriptions dump that is submitted for upload, and possibly from Postgres as well. | The plan is to look at the groups of annotations by date and/or their text in order to phase them out from the concise descriptions dump that is submitted for upload, and possibly from Postgres as well. | ||
| − | *Those that have a Date last updated date of 2004-06-17 in the OA, | + | Note: These are only the Description Type 'Concise_descritpion', not looking at Provisional descriptions'. |
| − | *Those genes that have the following description also from 2004-06-17: | + | *Those that have a Date last updated date of 2004-06-17 in the OA, 3075 genes |
| + | |||
| + | *Those genes that have the following description (also from 2004-06-17) | ||
| + | |||
| + | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein | ||
| + | interactions either with homologs of yeast Skp-1p or with other proteins. | ||
| + | Examples: fbxb genes, fbxa genes, a few sdz genes, number of unnamed (uncloned?) genes, total 295 genes | ||
| + | |||
| + | *Those genes with the description: | ||
| + | |||
| + | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') | ||
| + | domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in | ||
| + | wormpep77). | ||
| + | Examples: pqn genes, some abu genes, some unnamed (uncloned?) genes, total 72 genes | ||
Revision as of 19:38, 18 February 2016
The plan is to look at the groups of annotations by date and/or their text in order to phase them out from the concise descriptions dump that is submitted for upload, and possibly from Postgres as well.
Note: These are only the Description Type 'Concise_descritpion', not looking at Provisional descriptions'.
- Those that have a Date last updated date of 2004-06-17 in the OA, 3075 genes
- Those genes that have the following description (also from 2004-06-17)
This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
Examples: fbxb genes, fbxa genes, a few sdz genes, number of unnamed (uncloned?) genes, total 295 genes
- Those genes with the description:
The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion')
domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in
wormpep77).
Examples: pqn genes, some abu genes, some unnamed (uncloned?) genes, total 72 genes
