Paper Pipeline - To Do List

Short-Term

Correct invalid PMIDs and their associated paper types - Kimberly

• How often do we want to check for invalid PMIDs?
• PubMed maintains a file of obsolete PMIDs on their ftp site: ftp://ftp.ncbi.nlm.nih.gov/pubmed/deleted_pmids.txt

Write up a summary of the weekly checking script - Kimberly and Juancarlos

• Runs every Sunday at 1AM.
• Checks papers entries in postgres that are missing author, pages, title, type, or year.

Add a limited number of new paper types to allow for single type classification - Kimberly and Juancarlos

Finish documentation of current paper type mappings - PubMed vs postgres vs Journal - for informing SVMs and Textpresso searches - Caltech

Decide how to handle upload of Genetics papers - Karen, Juancarlos, Kimberly

Long-Term

Discuss timeline and implications for changing the Paper models to allow for multiple types - WormBase

Decide if, and how, we want to run a script that cross-checks PubMed and postgres data - Caltech