Paper Pipeline - To Do List

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Short-Term

Correct invalid PMIDs and their associated paper types - Kimberly

  • How often do we want to check for invalid PMIDs?
  • PubMed maintains a file of obsolete PMIDs on their ftp site.

Write up a summary of the weekly checking script - Kimberly and Juancarlos

Add a limited number of new paper types to allow for single type classification - Kimberly and Juancarlos

Finish documentation of current paper type mappings - PubMed vs postgres vs Journal - for informing SVMs and Textpresso searches - Caltech

Decide how to handle upload of Genetics papers - Karen, Juancarlos, Kimberly

Long-Term

Discuss timeline and implications for changing the Paper models to allow for multiple types - WormBase

Decide if, and how, we want to run a script that cross-checks PubMed and postgres data - Caltech