OA forms, tables, scripts, etc

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OA form summaries

OA form Function (Datatype) Postgres Tables Scripts Ontologies used Other dependencies Curator Other remarks
antibody Antibody objects Xiaodong Wang
concise Concise Description Ranjana Kishore, Kimberly Van Auken
disease Worm ortholog to human disease Ranjana Kishore
exprpat Expression pattern of genes expr_ /home/acedb/draciti/oa_expr_ace_dumper/use_package.pl Paper
Gene
Anatomy
GO
Lifestage
Daniela Raciti
gene class Concise description of gene classes Gene
Paper
Karen Yook
go Gene ontology annotation Kimberly Van Auken, Ranjana Kishore
genereg Gene regulation Xiaodong Wang
interaction Genetic and physical interactions int_ Paper
Gene
Variation
Phenotype
Person
Laboratory
Antibody
Rearrangement
Transgene
RNAi
Chris Grove, Gary Schindelman, Kimberly Van Auken, Karen Yook
molecule Drug/Chemical/Small molecule objects mop_ acedb/karen/Molecule/dump_molecule_ace.pl
acedb/karen/Molecule/database.ace
Paper
Chebi
Karen Yook
movie Movies mov_ /home/acedb/draciti/oa_movie_ace_dumper use_movie_package.pl Daniela Raciti
phenotype Annotation of phenotypes to variations, strains, rearrangements, transgenes app_
app_tables
acedb/work/allele_phenotype/use_package.pl
acedb/karen/phenote/paper_object/get_paper_object.pl
Paper
Person
Variation
Rearrangements
Transgene
Gene
Phenotype
Molecule
Anatomy
Lifestage
Laboratory
Karen Yook
picture Paper figure pic_ /home/acedb/draciti/oa_picture_ace_dumper/dump_picture_ace.pl Paper
Person
Expr_pattern
Anatomy
GO
Lifestage
Daniela Raciti
process Process curation prc_ /home/acedb/karen/process/use_process_curation_package.pl Paper
Person
GO
Phenotype
Gene
Molecule
Anatomy
Lifestage
Expression cluster
Taxon
Picture
Karen Yook
process term Creation of process names pro_ /home/acedb/karen/process/use_process_package.pl Paper Karen Yook
rnai RNAi phenotype curation Chris Grove, Gary Schindelman, Wen Chen
transgene Transgene object curation trp_
trp_tables
acedb/karen/transgene ./use_package.pl Gene
Paper
Laboratory
Person
Karen Yook



app_tables


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