Difference between revisions of "OA forms, tables, scripts, etc"
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|molecule||Drug/Chemical/Small molecule objects ||mop_ ||acedb/karen/Molecule/dump_molecule_ace.pl<br>acedb/karen/Molecule/database.ace ||Paper<br> Chebi<br> || ||Karen Yook || | |molecule||Drug/Chemical/Small molecule objects ||mop_ ||acedb/karen/Molecule/dump_molecule_ace.pl<br>acedb/karen/Molecule/database.ace ||Paper<br> Chebi<br> || ||Karen Yook || | ||
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− | |movie||Movies|| || || || ||Daniela Raciti || | + | |movie||Movies||mov_ ||/home/acedb/draciti/oa_movie_ace_dumper use_movie_package.pl || || ||Daniela Raciti || |
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|phenotype ||Annotation of phenotypes to variations, strains, rearrangements, transgenes||app_ <br> [http://wiki.wormbase.org/index.php/OA-phenotype#Phenotype_OA_postgres_tables app_tables]||acedb/work/allele_phenotype/use_package.pl<br>acedb/karen/phenote/paper_object/get_paper_object.pl ||Paper<br> Person<br> Variation<br> Rearrangements<br> Transgene<br> Gene<br> Phenotype<br> Molecule<br> Anatomy<br> Lifestage<br> Laboratory|| ||Karen Yook|| | |phenotype ||Annotation of phenotypes to variations, strains, rearrangements, transgenes||app_ <br> [http://wiki.wormbase.org/index.php/OA-phenotype#Phenotype_OA_postgres_tables app_tables]||acedb/work/allele_phenotype/use_package.pl<br>acedb/karen/phenote/paper_object/get_paper_object.pl ||Paper<br> Person<br> Variation<br> Rearrangements<br> Transgene<br> Gene<br> Phenotype<br> Molecule<br> Anatomy<br> Lifestage<br> Laboratory|| ||Karen Yook|| | ||
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− | |picture||Paper figure||pic_ ||/home/acedb/draciti/oa_picture_ace_dumper/dump_picture_ace.pl ||Paper<br> Anatomy<br> | + | |picture||Paper figure||pic_ ||/home/acedb/draciti/oa_picture_ace_dumper/dump_picture_ace.pl ||Paper<br> Person<br> Anatomy<br> GO<br> Lifestage<br> || ||Daniela Raciti|| |
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|process||Process curation||prc_ ||/home/acedb/karen/process/use_process_curation_package.pl ||Paper<br> Person<br> GO<br> Phenotype<br> Gene<br> Molecule<br> Anatomy<br> Lifestage<br> Expression cluster<br> Taxon<br> Picture|| ||Karen Yook|| | |process||Process curation||prc_ ||/home/acedb/karen/process/use_process_curation_package.pl ||Paper<br> Person<br> GO<br> Phenotype<br> Gene<br> Molecule<br> Anatomy<br> Lifestage<br> Expression cluster<br> Taxon<br> Picture|| ||Karen Yook|| |
Revision as of 22:49, 1 February 2013
OA form summaries
OA form | Function (Datatype) | Postgres Tables | Scripts | Ontologies used | Other dependencies | Curator | Other remarks |
antibody | Antibody objects | Xiaodong Wang | |||||
concise | Concise Description | Ranjana Kishore, Kimberly Van Auken | |||||
disease | Worm ortholog to human disease | Ranjana Kishore | |||||
exprpat | Expression pattern of genes | expr_ | /home/acedb/draciti/oa_expr_ace_dumper/use_package.pl | Paper Gene Anatomy Lifestage GO |
Daniela Raciti | ||
gene class | Concise description of gene classes | Gene Paper |
Karen Yook | ||||
go | Gene ontology annotation | Kimberly Van Auken, Ranjana Kishore | |||||
genereg | Gene regulation | Xiaodong Wang | |||||
interaction | Genetic and physical interactions | int_ | Paper Gene Variation Phenotype Person Laboratory Antibody Rearrangement Transgene RNAi |
Chris Grove, Gary Schindelman, Kimberly Van Auken, Karen Yook | |||
molecule | Drug/Chemical/Small molecule objects | mop_ | acedb/karen/Molecule/dump_molecule_ace.pl acedb/karen/Molecule/database.ace |
Paper Chebi |
Karen Yook | ||
movie | Movies | mov_ | /home/acedb/draciti/oa_movie_ace_dumper use_movie_package.pl | Daniela Raciti | |||
phenotype | Annotation of phenotypes to variations, strains, rearrangements, transgenes | app_ app_tables |
acedb/work/allele_phenotype/use_package.pl acedb/karen/phenote/paper_object/get_paper_object.pl |
Paper Person Variation Rearrangements Transgene Gene Phenotype Molecule Anatomy Lifestage Laboratory |
Karen Yook | ||
picture | Paper figure | pic_ | /home/acedb/draciti/oa_picture_ace_dumper/dump_picture_ace.pl | Paper Person Anatomy GO Lifestage |
Daniela Raciti | ||
process | Process curation | prc_ | /home/acedb/karen/process/use_process_curation_package.pl | Paper Person GO Phenotype Gene Molecule Anatomy Lifestage Expression cluster Taxon Picture |
Karen Yook | ||
process term | Creation of process names | pro_ | /home/acedb/karen/process/use_process_package.pl | Paper | Karen Yook | ||
rnai | RNAi phenotype curation | Chris Grove, Gary Schindelman, Wen Chen | |||||
transgene | Transgene object curation | trp_ trp_tables |
acedb/karen/transgene ./use_package.pl | Gene Paper Laboratory Person |
Karen Yook |
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