OA for disease term

In cases where there is no elegans gene to attach disease data (eg., Huntington's disease), data will be attached to the DO-term.

DO term model

 ?DO_term 
 Name  UNIQUE               ?Text
 Status UNIQUE              Valid
                            Obsolete
 Alternate_id               ?Text
 Definition UNIQUE          ?Text
 Worm_disease_model         ?Text  ?Species #Evidence //added Jan 2014, for WS242
 Comment                    Text
 Synonymn      Broad   ?Text     
               Exact   ?Text     
               Narrow  ?Text     
               Related ?Text
 Parent             Is_a  	?DO_term  XREF  Is
 Child              Is 	        ?DO_term  XREF  Is_a 
 DB_info            Database     ?Database  ?Database_field   Text              
 Type               GOLD                   
                    Gram_negative_bacterial_infectious_disease
                    Gram_positive_bacterial_infectious_disease
                    Sexually_transmitted_infectious_disease
                    Tick_borne_infectious_disease
                    Zoonotic_infectious_disease
 Attribute_of       Gene_by_biology    ?Gene       XREF   Experimental_model
                    Gene_by_orthology  ?Gene       XREF   Potential_model
                    Phenotype  ?Phenotype  XREF   DO_term
                    WBProcess  ?WBProcess  XREF   DO_term
                    Reference  ?Paper      XREF   DO_term 
 Version            UNIQUE Text

Fields for the Disease Term OA

Field descriptions for Disease Term OA

Order	Name	Type	Required?	Equivalent acedb tag	Example
1	DO term	Autocomplete obo	required
2	Curator	Autocomplete dropdown	required
3	Curator Hisotory	script populates	n/a
4	Species	Autocomplete dropdown	required
5	Worm model description	Big text box	required
6	DB:Reference (|DB:Reference)	required	1 or greater (separate values with pipes)	WBPaper00041363|WBPaperXXXXXXXX
7	Evidence code	required	1	IMP or ISS (use 'IMP' for Experimental_model genes and ISS for Potential_model genes)
8	With (or) From	optional	0 or greater (separate values with pipes)	OMIM:600565|OMIM:600566
9	Aspect	required	1	D (D for disease ontology, all annotations have this value)
10	DB Object Name	optional	0 or 1	(no value, leave empty)
11	DB Object Synonym (|Synonym)	optional	0 or greater	(no value, leave empty)
12	DB Object Type	required	1	gene (all annotations have this value)
13	Taxon	required	1 or 2	taxon:6239
14	Date	required	1	20130422 (this is the date of annotation dumped under Date_last_updated; for potential_model genes, use the date on which the OMIM homology script is run)
15	Assigned By	required	1	WB
16	Annotation Extension	optional	0 or greater	(no value, leave empty)
17	Gene Product Form ID	optional	0 or greater	(no value, leave empty)