OA for disease term
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Revision as of 18:09, 27 February 2014 by Rkishore (talk | contribs) (→Fields for the Disease Term OA)
In cases where there is no elegans gene to attach disease data (eg., Huntington's disease), data will be attached to the DO-term.
DO term model
?DO_term Name UNIQUE ?Text Status UNIQUE Valid Obsolete Alternate_id ?Text Definition UNIQUE ?Text Worm_disease_model ?Text ?Species #Evidence //added Jan 2014, for WS242 Comment Text Synonymn Broad ?Text Exact ?Text Narrow ?Text Related ?Text Parent Is_a ?DO_term XREF Is Child Is ?DO_term XREF Is_a DB_info Database ?Database ?Database_field Text Type GOLD Gram_negative_bacterial_infectious_disease Gram_positive_bacterial_infectious_disease Sexually_transmitted_infectious_disease Tick_borne_infectious_disease Zoonotic_infectious_disease Attribute_of Gene_by_biology ?Gene XREF Experimental_model Gene_by_orthology ?Gene XREF Potential_model Phenotype ?Phenotype XREF DO_term WBProcess ?WBProcess XREF DO_term Reference ?Paper XREF DO_term Version UNIQUE Text
Fields for the Disease Term OA
Order | Name | Type | Required? | Equivalent acedb tag | Example |
---|---|---|---|---|---|
1 | DO term | Autocomplete obo | required | ||
2 | Curator | Autocomplete dropdown | required | ||
3 | Curator Hisotory | script populates | n/a | ||
4 | Species | Autocomplete dropdown | required | ||
5 | Worm model description | Big text box | required | ||
6 | DB:Reference (|DB:Reference) | required | 1 or greater (separate values with pipes) |
WBPaper00041363|WBPaperXXXXXXXX | |
7 | Evidence code | required | 1 | IMP or ISS (use 'IMP' for Experimental_model genes and ISS for Potential_model genes) | |
8 | With (or) From | optional | 0 or greater (separate values with pipes) |
OMIM:600565|OMIM:600566 | |
9 | Aspect | required | 1 | D (D for disease ontology, all annotations have this value) | |
10 | DB Object Name | optional | 0 or 1 | (no value, leave empty) | |
11 | DB Object Synonym (|Synonym) | optional | 0 or greater | (no value, leave empty) | |
12 | DB Object Type | required | 1 | gene (all annotations have this value) | |
13 | Taxon | required | 1 or 2 | taxon:6239 | |
14 | Date | required | 1 | 20130422 (this is the date of annotation dumped under Date_last_updated; for potential_model genes, use the date on which the OMIM homology script is run) | |
15 | Assigned By | required | 1 | WB | |
16 | Annotation Extension | optional | 0 or greater | (no value, leave empty) | |
17 | Gene Product Form ID | optional | 0 or greater | (no value, leave empty) |