Difference between revisions of "OA for disease term"
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|+Field descriptions for Disease Term OA | |+Field descriptions for Disease Term OA | ||
|- | |- | ||
| − | ! Order !! Name !! Type !! Required? !! | + | ! Order !! Name !! Type !! Required? !! Shows as !! acedb tag |
|- | |- | ||
| − | |1 || DO term || Autocomplete obo || '''required'''|| | + | |1 || DO term || Autocomplete obo || '''required'''|| Huntington's disease (DOID:12858) || ?DO_term |
|- | |- | ||
| − | |2 || Curator || Autocomplete dropdown || '''required'''|| || | + | |2 || Curator || Autocomplete dropdown || '''required'''|| Ranjana Kishore || Curator_confirmed |
|- | |- | ||
| − | |3 || Curator History || script populates || n/a || || | + | |3 || Curator History || script populates || n/a || || n/a |
|- | |- | ||
| − | |4 || Species || Autocomplete dropdown || '''required''' || | + | |4 || Species || Autocomplete dropdown || '''required''' || Homo sapien || ?Species |
|- | |- | ||
| − | |5 || Worm Model Description || Big text box ||'''required''' || | + | |5 || Worm Model Description || Big text box ||'''required''' || The C. elegans model for..|| Worm_model_description |
|- | |- | ||
| − | |6 || Paper || Autocomplete obo, multivalue || '''required'''|| | + | |6 || Paper || Autocomplete obo, multivalue || '''required'''|| WBPaper00041363 ||Paper_evidence|| |
|- | |- | ||
| − | |7 || Date || Autocompleted for new annotation<br/> editable for old ||'''required'''|| | + | |7 || Date || Autocompleted for new annotation<br/> editable for old ||'''required'''|| 2014-02-27 || Date_last_updated |
|- | |- | ||
| − | |8 || Comment || Free text || ''optional''|| | + | |8 || Comment || Free text || ''optional''|| Waiting for DO_term.. || n/a || |
|- | |- | ||
| − | |9 || PGID || Script populates || n/a || | + | |9 || PGID || Script populates || n/a || 48 || n/a || |
|- | |- | ||
|} | |} | ||
Revision as of 18:34, 27 February 2014
In cases where there is no elegans gene to attach disease data (eg., Huntington's disease), data will be attached to the DO-term.
DO term model
?DO_term
Name UNIQUE ?Text
Status UNIQUE Valid
Obsolete
Alternate_id ?Text
Definition UNIQUE ?Text
Worm_disease_model ?Text ?Species #Evidence //added Jan 2014, for WS242
Comment Text
Synonymn Broad ?Text
Exact ?Text
Narrow ?Text
Related ?Text
Parent Is_a ?DO_term XREF Is
Child Is ?DO_term XREF Is_a
DB_info Database ?Database ?Database_field Text
Type GOLD
Gram_negative_bacterial_infectious_disease
Gram_positive_bacterial_infectious_disease
Sexually_transmitted_infectious_disease
Tick_borne_infectious_disease
Zoonotic_infectious_disease
Attribute_of Gene_by_biology ?Gene XREF Experimental_model
Gene_by_orthology ?Gene XREF Potential_model
Phenotype ?Phenotype XREF DO_term
WBProcess ?WBProcess XREF DO_term
Reference ?Paper XREF DO_term
Version UNIQUE Text
Fields for the Disease Term OA
| Order | Name | Type | Required? | Shows as | acedb tag | |
|---|---|---|---|---|---|---|
| 1 | DO term | Autocomplete obo | required | Huntington's disease (DOID:12858) | ?DO_term | |
| 2 | Curator | Autocomplete dropdown | required | Ranjana Kishore | Curator_confirmed | |
| 3 | Curator History | script populates | n/a | n/a | ||
| 4 | Species | Autocomplete dropdown | required | Homo sapien | ?Species | |
| 5 | Worm Model Description | Big text box | required | The C. elegans model for.. | Worm_model_description | |
| 6 | Paper | Autocomplete obo, multivalue | required | WBPaper00041363 | Paper_evidence | |
| 7 | Date | Autocompleted for new annotation editable for old |
required | 2014-02-27 | Date_last_updated | |
| 8 | Comment | Free text | optional | Waiting for DO_term.. | n/a | |
| 9 | PGID | Script populates | n/a | 48 | n/a |
