Difference between revisions of "OA for disease term"
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! Order !! Name !! Type !! Required? !! Equivalent acedb tag !! Example | ! Order !! Name !! Type !! Required? !! Equivalent acedb tag !! Example | ||
|- | |- | ||
| − | |1 ||DO term || Autocomplete obo || '''required'''|| | + | |1 || DO term || Autocomplete obo || '''required'''|| || |
|- | |- | ||
| − | |2 || | + | |2 || Curator || Autocomplete dropdown || '''required'''|| || |
|- | |- | ||
| − | |3 || | + | |3 || Curator Hisotory || script populates || n/a || || |
|- | |- | ||
| − | |4 || | + | |4 || Species || Autocomplete dropdown || '''required''' || || |
|- | |- | ||
| − | |5 || | + | |5 || Worm model description || Big text box ||'''required''' || || |
|- | |- | ||
|6 ||DB:Reference (<nowiki>|</nowiki>DB:Reference)||'''required'''||1 or greater<br/> (separate values with pipes)||WBPaper00041363<nowiki>|</nowiki>WBPaperXXXXXXXX | |6 ||DB:Reference (<nowiki>|</nowiki>DB:Reference)||'''required'''||1 or greater<br/> (separate values with pipes)||WBPaper00041363<nowiki>|</nowiki>WBPaperXXXXXXXX | ||
Revision as of 18:09, 27 February 2014
In cases where there is no elegans gene to attach disease data (eg., Huntington's disease), data will be attached to the DO-term.
DO term model
?DO_term
Name UNIQUE ?Text
Status UNIQUE Valid
Obsolete
Alternate_id ?Text
Definition UNIQUE ?Text
Worm_disease_model ?Text ?Species #Evidence //added Jan 2014, for WS242
Comment Text
Synonymn Broad ?Text
Exact ?Text
Narrow ?Text
Related ?Text
Parent Is_a ?DO_term XREF Is
Child Is ?DO_term XREF Is_a
DB_info Database ?Database ?Database_field Text
Type GOLD
Gram_negative_bacterial_infectious_disease
Gram_positive_bacterial_infectious_disease
Sexually_transmitted_infectious_disease
Tick_borne_infectious_disease
Zoonotic_infectious_disease
Attribute_of Gene_by_biology ?Gene XREF Experimental_model
Gene_by_orthology ?Gene XREF Potential_model
Phenotype ?Phenotype XREF DO_term
WBProcess ?WBProcess XREF DO_term
Reference ?Paper XREF DO_term
Version UNIQUE Text
Fields for the Disease Term OA
| Order | Name | Type | Required? | Equivalent acedb tag | Example |
|---|---|---|---|---|---|
| 1 | DO term | Autocomplete obo | required | ||
| 2 | Curator | Autocomplete dropdown | required | ||
| 3 | Curator Hisotory | script populates | n/a | ||
| 4 | Species | Autocomplete dropdown | required | ||
| 5 | Worm model description | Big text box | required | ||
| 6 | DB:Reference (|DB:Reference) | required | 1 or greater (separate values with pipes) |
WBPaper00041363|WBPaperXXXXXXXX | |
| 7 | Evidence code | required | 1 | IMP or ISS (use 'IMP' for Experimental_model genes and ISS for Potential_model genes) | |
| 8 | With (or) From | optional | 0 or greater (separate values with pipes) |
OMIM:600565|OMIM:600566 | |
| 9 | Aspect | required | 1 | D (D for disease ontology, all annotations have this value) | |
| 10 | DB Object Name | optional | 0 or 1 | (no value, leave empty) | |
| 11 | DB Object Synonym (|Synonym) | optional | 0 or greater | (no value, leave empty) | |
| 12 | DB Object Type | required | 1 | gene (all annotations have this value) | |
| 13 | Taxon | required | 1 or 2 | taxon:6239 | |
| 14 | Date | required | 1 | 20130422 (this is the date of annotation dumped under Date_last_updated; for potential_model genes, use the date on which the OMIM homology script is run) | |
| 15 | Assigned By | required | 1 | WB | |
| 16 | Annotation Extension | optional | 0 or greater | (no value, leave empty) | |
| 17 | Gene Product Form ID | optional | 0 or greater | (no value, leave empty) |
