OA and scripts for disease data

From WormBaseWiki
Revision as of 18:36, 7 January 2013 by Rkishore (talk | contribs) (Created page with 'OA for disease data in WormBase: Field 1 Name: WBGene Behavior of field: Autocomplete obo Source: WBGene obo Similar to: WBGene in the GO OA or concise descrips OA As one star…')
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search

OA for disease data in WormBase:

Field 1 Name: WBGene Behavior of field: Autocomplete obo Source: WBGene obo Similar to: WBGene in the GO OA or concise descrips OA As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID.

Field 2 Name: Experimental model for Behavior:Autocomplete obo Obo file to be used: DO_term obo Source: https://diseaseontology.svn.sourceforge.net/svnroot/diseaseontology/trunk/HumanDO.obo Similar to: GO term field in the GO OA.

For example, curator starts typing 'Alz', picks 'Alzheimer's disease' from the drop-down and script populates field with 'Alzheimer's disease (DOID:10652); similar to GO term OA in the GO OA. Updating: How do we update this obo file, how frequently do other obo files get updated?

Field 3 Name: Species Behavior: Auto-complete drop-down with ready values Similar to: Project field in the GO OA Current values: Homo sapiens

Field 4 Name: Disease_relevance Behavior: This is the Human_disease_relevance

Field 4 Name: Database Behavior: Free text, multiple values comma-separated