Difference between revisions of "OA and scripts for disease data"
| Line 28: | Line 28: | ||
Current values: Homo sapiens <br/ > | Current values: Homo sapiens <br/ > | ||
| − | Field 5 Name: xref Database | + | '''Field 5 Name''': xref Database <br/ > |
Behavior: Free text, multiple values comma-separated | Behavior: Free text, multiple values comma-separated | ||
| Line 37: | Line 37: | ||
Change needed: Human_disease_relevance will not be entered via the concise OA. We can remove the 'Human_disease_relevance' from the 'Description Type' field in the OA. <br/ > | Change needed: Human_disease_relevance will not be entered via the concise OA. We can remove the 'Human_disease_relevance' from the 'Description Type' field in the OA. <br/ > | ||
| − | '''Field 7 Name:''' Database <br/ > | + | '''Field 7 Name:''' Paper for Disease Relevance <br/ > |
| + | Behavior: Autocomplete obo <br/ > | ||
| + | Obo file to be used: WBPaper obo <br/ > | ||
| + | Similar to: The Paper field in the GO OA <br/ > | ||
| + | |||
| + | '''Field 8 Name:''' Database <br/ > | ||
Behavior: Free text, multiple values comma-separated <br/ > | Behavior: Free text, multiple values comma-separated <br/ > | ||
| Line 46: | Line 51: | ||
Paper <br/ > | Paper <br/ > | ||
Species <br/ > | Species <br/ > | ||
| − | Database <br/ > | + | xref Database <br/ > |
Revision as of 20:00, 7 January 2013
OA for disease data in WormBase:
Editor:
Field 1 Name: WBGene
Behavior of field: Autocomplete obo
Source: WBGene obo
Similar to: WBGene in the GO OA or concise descrips OA
As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID.
Field 2 Name: Experimental model for
Behavior:Autocomplete obo
Obo file to be used: DO_term obo
Source: https://diseaseontology.svn.sourceforge.net/svnroot/diseaseontology/trunk/HumanDO.obo
Similar to: GO term field in the GO OA.
For example, curator starts typing 'Alz', picks 'Alzheimer's disease' from the drop-down and script populates field with 'Alzheimer's disease (DOID:10652); similar to GO term OA in the GO OA.
Updating: How do we update this obo file, how frequently do other obo files get updated?
Field 3 Name: Paper for Experimental Model
Obo file to be used: DO_term obo
Behavior:Autocomplete obo
Obo file to be used: WBPaper obo
Similar to: The Paper field in the GO OA
Field 4 Name: Species
Behavior: Auto-complete drop-down with ready values
Similar to: Project field in the GO OA
Current values: Homo sapiens
Field 5 Name: xref Database
Behavior: Free text, multiple values comma-separated
Field 6 Name: Disease_relevance
Behavior: Big Text box (big text-box, keeps expanding)
Similar To: 'Description Text' field in the Concise OA.
This is the Human_disease_relevance description (it appears as one of the drop-down values) for the'Description Type' field in the 'Concise' OA.
Change needed: Human_disease_relevance will not be entered via the concise OA. We can remove the 'Human_disease_relevance' from the 'Description Type' field in the OA.
Field 7 Name: Paper for Disease Relevance
Behavior: Autocomplete obo
Obo file to be used: WBPaper obo
Similar to: The Paper field in the GO OA
Field 8 Name: Database
Behavior: Free text, multiple values comma-separated
Data Table Columns:
WBGene
Experimental Model For
Paper
Species
xref Database
