Difference between revisions of "OA and scripts for disease data"

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(Created page with 'OA for disease data in WormBase: Field 1 Name: WBGene Behavior of field: Autocomplete obo Source: WBGene obo Similar to: WBGene in the GO OA or concise descrips OA As one star…')
 
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OA for disease data in WormBase:
 
OA for disease data in WormBase:
  
Field 1 Name: WBGene  
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Field 1 Name: WBGene<br/ >
Behavior of field: Autocomplete obo  
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Behavior of field: Autocomplete obo<br/ >
Source: WBGene obo
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Source: WBGene obo<br/ >
Similar to: WBGene in the GO OA or concise descrips OA
+
Similar to: WBGene in the GO OA or concise descrips OA<br/ >
As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID.
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As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID.<br/ >
  
Field 2 Name: Experimental model for
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Field 2 Name: Experimental model for<br/ >
Behavior:Autocomplete obo  
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Behavior:Autocomplete obo<br/ >
Obo file to be used: DO_term obo  
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Obo file to be used: DO_term obo<br/ >
Source: https://diseaseontology.svn.sourceforge.net/svnroot/diseaseontology/trunk/HumanDO.obo
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Source: https://diseaseontology.svn.sourceforge.net/svnroot/diseaseontology/trunk/HumanDO.obo<br/ >
Similar to: GO term field in the GO OA.
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Similar to: GO term field in the GO OA.<br/ >
  
For example, curator starts typing 'Alz', picks 'Alzheimer's disease' from the drop-down and script populates field with 'Alzheimer's disease (DOID:10652); similar to GO term OA in the GO OA.
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For example, curator starts typing 'Alz', picks 'Alzheimer's disease' from the drop-down and script populates field with 'Alzheimer's disease (DOID:10652); similar to GO term OA in the GO OA.<br/ >
Updating: How do we update this obo file, how frequently do other obo files get updated?
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Updating: How do we update this obo file, how frequently do other obo files get updated?<br/ >
  
Field 3 Name: Species
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Field 3 Name: Species<br/ >
Behavior: Auto-complete drop-down with ready values
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Behavior: Auto-complete drop-down with ready values<br/ >
Similar to: Project field in the GO OA
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Similar to: Project field in the GO OA<br/ >
Current values: Homo sapiens
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Current values: Homo sapiens<br/ >
  
Field 4 Name: Disease_relevance
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Field 4 Name: Disease_relevance<br/ >
 
Behavior: This is the Human_disease_relevance  
 
Behavior: This is the Human_disease_relevance  
  
Field 4 Name: Database
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Field 4 Name: Database<br/ >
Behavior: Free text, multiple values comma-separated
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Behavior: Free text, multiple values comma-separated<br/ >

Revision as of 18:43, 7 January 2013

OA for disease data in WormBase:

Field 1 Name: WBGene
Behavior of field: Autocomplete obo
Source: WBGene obo
Similar to: WBGene in the GO OA or concise descrips OA
As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID.

Field 2 Name: Experimental model for
Behavior:Autocomplete obo
Obo file to be used: DO_term obo
Source: https://diseaseontology.svn.sourceforge.net/svnroot/diseaseontology/trunk/HumanDO.obo
Similar to: GO term field in the GO OA.

For example, curator starts typing 'Alz', picks 'Alzheimer's disease' from the drop-down and script populates field with 'Alzheimer's disease (DOID:10652); similar to GO term OA in the GO OA.
Updating: How do we update this obo file, how frequently do other obo files get updated?

Field 3 Name: Species
Behavior: Auto-complete drop-down with ready values
Similar to: Project field in the GO OA
Current values: Homo sapiens

Field 4 Name: Disease_relevance
Behavior: This is the Human_disease_relevance

Field 4 Name: Database
Behavior: Free text, multiple values comma-separated