Difference between revisions of "OA and scripts for disease data"
Line 1: | Line 1: | ||
OA for disease data in WormBase: | OA for disease data in WormBase: | ||
− | '''Field 1 Name''' | + | '''Field 1 Name:''' WBGene<br/ > |
Behavior of field: Autocomplete obo<br/ > | Behavior of field: Autocomplete obo<br/ > | ||
Source: WBGene obo<br/ > | Source: WBGene obo<br/ > | ||
Line 7: | Line 7: | ||
As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID.<br/ > | As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID.<br/ > | ||
− | Field 2 Name: Experimental model for<br/ > | + | '''Field 2 Name:''' Experimental model for<br/ > |
Behavior:Autocomplete obo<br/ > | Behavior:Autocomplete obo<br/ > | ||
Obo file to be used: DO_term obo<br/ > | Obo file to be used: DO_term obo<br/ > | ||
Line 15: | Line 15: | ||
Updating: How do we update this obo file, how frequently do other obo files get updated?<br/ > | Updating: How do we update this obo file, how frequently do other obo files get updated?<br/ > | ||
− | Field 3 Name: Paper for Experimental Model<br/ > | + | '''Field 3 Name:''' Paper for Experimental Model<br/ > |
Obo file to be used: DO_term obo<br/ > | Obo file to be used: DO_term obo<br/ > | ||
Behavior:Autocomplete obo<br/ > | Behavior:Autocomplete obo<br/ > | ||
Line 21: | Line 21: | ||
Similar to: The Paper field in the GO OA | Similar to: The Paper field in the GO OA | ||
− | Field 4 Name: Species<br/ > | + | '''Field 4 Name:''' Species<br/ > |
Behavior: Auto-complete drop-down with ready values<br/ > | Behavior: Auto-complete drop-down with ready values<br/ > | ||
Similar to: Project field in the GO OA<br/ > | Similar to: Project field in the GO OA<br/ > | ||
Current values: Homo sapiens<br/ > | Current values: Homo sapiens<br/ > | ||
− | Field 5 Name: Disease_relevance<br/ > | + | '''Field 5 Name:''' Disease_relevance<br/ > |
Behavior: Big Text box (big text-box, keeps expanding)<br/ > | Behavior: Big Text box (big text-box, keeps expanding)<br/ > | ||
Similar To: 'Description Text' field in the Concise OA.<br/ > | Similar To: 'Description Text' field in the Concise OA.<br/ > | ||
Line 33: | Line 33: | ||
− | Field 4 Name: Database<br/ > | + | '''Field 4 Name:''' Database<br/ > |
Behavior: Free text, multiple values comma-separated<br/ > | Behavior: Free text, multiple values comma-separated<br/ > |
Revision as of 19:00, 7 January 2013
OA for disease data in WormBase:
Field 1 Name: WBGene
Behavior of field: Autocomplete obo
Source: WBGene obo
Similar to: WBGene in the GO OA or concise descrips OA
As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID.
Field 2 Name: Experimental model for
Behavior:Autocomplete obo
Obo file to be used: DO_term obo
Source: https://diseaseontology.svn.sourceforge.net/svnroot/diseaseontology/trunk/HumanDO.obo
Similar to: GO term field in the GO OA.
For example, curator starts typing 'Alz', picks 'Alzheimer's disease' from the drop-down and script populates field with 'Alzheimer's disease (DOID:10652); similar to GO term OA in the GO OA.
Updating: How do we update this obo file, how frequently do other obo files get updated?
Field 3 Name: Paper for Experimental Model
Obo file to be used: DO_term obo
Behavior:Autocomplete obo
Obo file to be used: WBPaper obo
Similar to: The Paper field in the GO OA
Field 4 Name: Species
Behavior: Auto-complete drop-down with ready values
Similar to: Project field in the GO OA
Current values: Homo sapiens
Field 5 Name: Disease_relevance
Behavior: Big Text box (big text-box, keeps expanding)
Similar To: 'Description Text' field in the Concise OA.
This is the Human_disease_relevance description (it appears as one of the drop-down values) for the'Description Type' field in the 'Concise' OA.
Change needed: Human_disease_relevance will not be entered via the concise OA. We can remove the 'Human_disease_relevance' from the 'Description Type' field in the OA.
Field 4 Name: Database
Behavior: Free text, multiple values comma-separated