Difference between revisions of "OA and scripts for disease data"
(Created page with 'OA for disease data in WormBase: Field 1 Name: WBGene Behavior of field: Autocomplete obo Source: WBGene obo Similar to: WBGene in the GO OA or concise descrips OA As one star…') |
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OA for disease data in WormBase: | OA for disease data in WormBase: | ||
− | Field 1 Name: WBGene | + | Field 1 Name: WBGene<br/ > |
− | Behavior of field: Autocomplete obo | + | Behavior of field: Autocomplete obo<br/ > |
− | Source: WBGene obo | + | Source: WBGene obo<br/ > |
− | Similar to: WBGene in the GO OA or concise descrips OA | + | Similar to: WBGene in the GO OA or concise descrips OA<br/ > |
− | As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID. | + | As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID.<br/ > |
− | Field 2 Name: Experimental model for | + | Field 2 Name: Experimental model for<br/ > |
− | Behavior:Autocomplete obo | + | Behavior:Autocomplete obo<br/ > |
− | Obo file to be used: DO_term obo | + | Obo file to be used: DO_term obo<br/ > |
− | Source: https://diseaseontology.svn.sourceforge.net/svnroot/diseaseontology/trunk/HumanDO.obo | + | Source: https://diseaseontology.svn.sourceforge.net/svnroot/diseaseontology/trunk/HumanDO.obo<br/ > |
− | Similar to: GO term field in the GO OA. | + | Similar to: GO term field in the GO OA.<br/ > |
− | For example, curator starts typing 'Alz', picks 'Alzheimer's disease' from the drop-down and script populates field with 'Alzheimer's disease (DOID:10652); similar to GO term OA in the GO OA. | + | For example, curator starts typing 'Alz', picks 'Alzheimer's disease' from the drop-down and script populates field with 'Alzheimer's disease (DOID:10652); similar to GO term OA in the GO OA.<br/ > |
− | Updating: How do we update this obo file, how frequently do other obo files get updated? | + | Updating: How do we update this obo file, how frequently do other obo files get updated?<br/ > |
− | Field 3 Name: Species | + | Field 3 Name: Species<br/ > |
− | Behavior: Auto-complete drop-down with ready values | + | Behavior: Auto-complete drop-down with ready values<br/ > |
− | Similar to: Project field in the GO OA | + | Similar to: Project field in the GO OA<br/ > |
− | Current values: Homo sapiens | + | Current values: Homo sapiens<br/ > |
− | Field 4 Name: Disease_relevance | + | Field 4 Name: Disease_relevance<br/ > |
Behavior: This is the Human_disease_relevance | Behavior: This is the Human_disease_relevance | ||
− | Field 4 Name: Database | + | Field 4 Name: Database<br/ > |
− | Behavior: Free text, multiple values comma-separated | + | Behavior: Free text, multiple values comma-separated<br/ > |
Revision as of 18:43, 7 January 2013
OA for disease data in WormBase:
Field 1 Name: WBGene
Behavior of field: Autocomplete obo
Source: WBGene obo
Similar to: WBGene in the GO OA or concise descrips OA
As one starts typing locus name, eg, lin-10 or cosmid name, eg., C09H6 script autocompletes and fills in WBGene ID.
Field 2 Name: Experimental model for
Behavior:Autocomplete obo
Obo file to be used: DO_term obo
Source: https://diseaseontology.svn.sourceforge.net/svnroot/diseaseontology/trunk/HumanDO.obo
Similar to: GO term field in the GO OA.
For example, curator starts typing 'Alz', picks 'Alzheimer's disease' from the drop-down and script populates field with 'Alzheimer's disease (DOID:10652); similar to GO term OA in the GO OA.
Updating: How do we update this obo file, how frequently do other obo files get updated?
Field 3 Name: Species
Behavior: Auto-complete drop-down with ready values
Similar to: Project field in the GO OA
Current values: Homo sapiens
Field 4 Name: Disease_relevance
Behavior: This is the Human_disease_relevance
Field 4 Name: Database
Behavior: Free text, multiple values comma-separated