Difference between revisions of "November 2012 - Weekly Pipeline Set-up"
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'''Results File to Curation Tool''' | '''Results File to Curation Tool''' | ||
| + | *Can we automate transfer of Textpresso search results from textpresso-dev to the appropriate directory on tazendra: | ||
| + | |||
| + | /home/acedb/kimberly/ccc_dicty/dicty_ccc_datafiles | ||
| + | |||
| + | Each file will need to be placed in a directory beginning with name 'results' | ||
| + | |||
| + | We should establish a naming convention for the files. | ||
| + | |||
| + | '''Transfer of Annotations to Protein2GO''' | ||
| + | |||
| + | *Need User ID for WB | ||
| + | *Will need to assign annotations using UniProtKB identifiers - via dictyBase gp2protein file or a gpi file? | ||
| + | *Evidence code will be IDA (for now, future implementations will require IPI for complex annotations) | ||
| + | *GO term identifier | ||
Revision as of 21:48, 6 November 2012
Papers for Annotation
- dictyBase (Bob) will send Textpresso PMIDs for CCC curation every Monday
Up-to-Date Gene Lists
- dictyBase will send Textpresso the updated gene name, identifier, and synonym list every Monday night
Results File to Curation Tool
- Can we automate transfer of Textpresso search results from textpresso-dev to the appropriate directory on tazendra:
/home/acedb/kimberly/ccc_dicty/dicty_ccc_datafiles
Each file will need to be placed in a directory beginning with name 'results'
We should establish a naming convention for the files.
Transfer of Annotations to Protein2GO
- Need User ID for WB
- Will need to assign annotations using UniProtKB identifiers - via dictyBase gp2protein file or a gpi file?
- Evidence code will be IDA (for now, future implementations will require IPI for complex annotations)
- GO term identifier
