Noctua model curation tracking table

From WormBaseWiki
Revision as of 20:29, 28 December 2017 by Vanaukenk (talk | contribs)
Jump to navigationJump to search
Curator Broad Category Pathway Noctua Model Title Genes GO Term(s), IDs Module(s) Noctua Model URL Model Status To Do
Kimberly Apoptosis Apoptotic process involved in development - C. elegans NSM sister cell death http://noctua.berkeleybop.org/editor/graph/gomodel:5745387b00001432 Development
Kimberly Axon regeneration Rac module; upstream of JNK-MAPK C. elegans regulation of axon regeneration http://noctua.berkeleybop.org/editor/graph/gomodel:591f58ab00000003 Development
Kimberly Dosage Compensation C. elegans X chromosome dosage compensation http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000147 Development
EGF Signaling
FGF Signaling
Kimberly Distal tip cell migration Glycosylation The directed migration of gonadal distal tip cells in Caenorhabditis elegans requires NGAT-1, a ß1,4-N-acetylgalactosaminyltransferase enzyme http://noctua.berkeleybop.org/editor/graph/gomodel:5993df9e00000138 Development
Kimberly Dauer GPCR Signaling Two chemoreceptors mediate developmental effects of dauer pheromone in C. elegans. http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000454 Development
Jae, Jane, Kimberly Egg laying GPCR Signaling GRK-2 egg laying regulation JM http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000287 Development Finish up annotations for other genes in the paper
Kimberly Innate immune response GPCR Signaling The DAF-16/FOXO transcription factor functions as a regulator of epidermal innate immunity. http://noctua.berkeleybop.org/editor/graph/gomodel:5993df9e00000158 Development
Kimberly Innate immune response GPCR Signaling and MAPK signaling C_elegans_defense_response_to_fungus http://noctua.berkeleybop.org/editor/graph/gomodel:564622cc00000003 Development
Kimberly Heterochronic pathway Control of C. elegans larval developmental timing - the heterochronic pathway http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000246 Development
Kimberly Insulin Signaling Signaling - C. elegans insulin receptor signaling http://noctua.berkeleybop.org/editor/graph/gomodel:5667fdd400000696 Development
Kimberly Germ line stem cell maintenance Notch Signaling C. elegans germline stem cell maintenance - Notch pathway Notch signaling pathway (GO:0007219), positive regulation of stem cell population maintenance (GO:1902459), positive regulation of stem cell proliferation (GO:2000648) http://noctua.berkeleybop.org/editor/graph/gomodel:5745387b00001750 Development
Kimberly Neuronal morphogenesis - AFD thermosensory neuron Receptor guanylyl cyclase Cellular Component Organization or Biogenesis - C. elegans Glial Control of Neuron Receptor Ending Shape http://noctua.berkeleybop.org/editor/graph/gomodel:5716c41300000192 Development
Kimberly Olfactory behavior Developmental programming modulates olfactory behavior in C. elegans via endogenous RNAi pathways. (PMID:27351255) http://noctua.berkeleybop.org/editor/graph/gomodel:59237a3c00000026 Development
Kimberly Thermosensory behavior cyclic nucleotide-gated ion channels C. elegans CNG-3 in non-motile cilium of AFD (same reference) cng-3 http://noctua.berkeleybop.org/editor/graph/gomodel:5900dc7400001096 Development
Kimberly Striated muscle mitochondrial patterning Receptor tyrosine phosphatase The secreted MSP domain of C. elegans VAPB homolog VPR-1 patterns the adult striated muscle mitochondrial reticulum via SMN-1 http://noctua.berkeleybop.org/editor/graph/gomodel:5970219a00000566 Development
Kimberly Germ line stem cell maintenance TGFbeta Signaling Linking the environment, DAF-7/TGFβ signaling and LAG-2/DSL ligand expression in the germline stem cell niche http://noctua.berkeleybop.org/editor/graph/gomodel:59bee34700000074 Development
Kimberly DA/DB motor neuron axon outgrowth Wnt Signaling The ENU-3 protein family members function in the Wnt pathway parallel to UNC-6/Netrin to promote motor neuron axon outgrowth in C. elegans. http://noctua.berkeleybop.org/editor/graph/gomodel:598826eb00000296 Development
Chris Q neuroblast descendant migration Wnt Signaling Canonical Wnt signaling in C. elegans - QL neuroblast descendant migration canonical Wnt signaling pathway (GO:0060070), cell migration (GO:0016477), transcription from RNA polymerase II promoter (GO:0006366) http://noctua.berkeleybop.org/editor/graph/gomodel:595a9ee700000584 Development