Difference between revisions of "Noctua model curation tracking table"
From WormBaseWiki
Jump to navigationJump to search| Line 5: | Line 5: | ||
! Pathway | ! Pathway | ||
! Noctua Model Title | ! Noctua Model Title | ||
| + | ! Genes | ||
! GO Term(s), IDs | ! GO Term(s), IDs | ||
! Module(s) | ! Module(s) | ||
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| Apoptotic process involved in development - C. elegans NSM sister cell death | | Apoptotic process involved in development - C. elegans NSM sister cell death | ||
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| Rac module; upstream of JNK-MAPK | | Rac module; upstream of JNK-MAPK | ||
| C. elegans regulation of axon regeneration | | C. elegans regulation of axon regeneration | ||
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| Dosage Compensation | | Dosage Compensation | ||
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| − | | C. elegans X chromosome dosage compensation | + | | C. elegans X chromosome dosage compensation |
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| EGF Signaling | | EGF Signaling | ||
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| FGF Signaling | | FGF Signaling | ||
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| The directed migration of gonadal distal tip cells in Caenorhabditis elegans requires NGAT-1, a ß1,4-N-acetylgalactosaminyltransferase enzyme | | The directed migration of gonadal distal tip cells in Caenorhabditis elegans requires NGAT-1, a ß1,4-N-acetylgalactosaminyltransferase enzyme | ||
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| http://noctua.berkeleybop.org/editor/graph/gomodel:5993df9e00000138 | | http://noctua.berkeleybop.org/editor/graph/gomodel:5993df9e00000138 | ||
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| Two chemoreceptors mediate developmental effects of dauer pheromone in C. elegans. | | Two chemoreceptors mediate developmental effects of dauer pheromone in C. elegans. | ||
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| http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000454 | | http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000454 | ||
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| GRK-2 egg laying regulation JM | | GRK-2 egg laying regulation JM | ||
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| http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000287 | | http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000287 | ||
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| The DAF-16/FOXO transcription factor functions as a regulator of epidermal innate immunity. | | The DAF-16/FOXO transcription factor functions as a regulator of epidermal innate immunity. | ||
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| http://noctua.berkeleybop.org/editor/graph/gomodel:5993df9e00000158 | | http://noctua.berkeleybop.org/editor/graph/gomodel:5993df9e00000158 | ||
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| C_elegans_defense_response_to_fungus | | C_elegans_defense_response_to_fungus | ||
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| http://noctua.berkeleybop.org/editor/graph/gomodel:564622cc00000003 | | http://noctua.berkeleybop.org/editor/graph/gomodel:564622cc00000003 | ||
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| Control of C. elegans larval developmental timing - the heterochronic pathway | | Control of C. elegans larval developmental timing - the heterochronic pathway | ||
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| Line 125: | Line 137: | ||
| Insulin Signaling | | Insulin Signaling | ||
| Signaling - C. elegans insulin receptor signaling | | Signaling - C. elegans insulin receptor signaling | ||
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| Notch Signaling | | Notch Signaling | ||
| C. elegans germline stem cell maintenance - Notch pathway | | C. elegans germline stem cell maintenance - Notch pathway | ||
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| Notch signaling pathway (GO:0007219), positive regulation of stem cell population maintenance (GO:1902459), positive regulation of stem cell proliferation (GO:2000648) | | Notch signaling pathway (GO:0007219), positive regulation of stem cell population maintenance (GO:1902459), positive regulation of stem cell proliferation (GO:2000648) | ||
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| Receptor guanylyl cyclase | | Receptor guanylyl cyclase | ||
| Cellular Component Organization or Biogenesis - C. elegans Glial Control of Neuron Receptor Ending Shape | | Cellular Component Organization or Biogenesis - C. elegans Glial Control of Neuron Receptor Ending Shape | ||
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| Developmental programming modulates olfactory behavior in C. elegans via endogenous RNAi pathways. (PMID:27351255) | | Developmental programming modulates olfactory behavior in C. elegans via endogenous RNAi pathways. (PMID:27351255) | ||
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| Receptor tyrosine phosphatase | | Receptor tyrosine phosphatase | ||
| The secreted MSP domain of C. elegans VAPB homolog VPR-1 patterns the adult striated muscle mitochondrial reticulum via SMN-1 | | The secreted MSP domain of C. elegans VAPB homolog VPR-1 patterns the adult striated muscle mitochondrial reticulum via SMN-1 | ||
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| TGFbeta Signaling | | TGFbeta Signaling | ||
| Linking the environment, DAF-7/TGFβ signaling and LAG-2/DSL ligand expression in the germline stem cell niche | | Linking the environment, DAF-7/TGFβ signaling and LAG-2/DSL ligand expression in the germline stem cell niche | ||
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| Wnt Signaling | | Wnt Signaling | ||
| The ENU-3 protein family members function in the Wnt pathway parallel to UNC-6/Netrin to promote motor neuron axon outgrowth in C. elegans. | | The ENU-3 protein family members function in the Wnt pathway parallel to UNC-6/Netrin to promote motor neuron axon outgrowth in C. elegans. | ||
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| Wnt Signaling | | Wnt Signaling | ||
| Canonical Wnt signaling in C. elegans - QL neuroblast descendant migration | | Canonical Wnt signaling in C. elegans - QL neuroblast descendant migration | ||
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| canonical Wnt signaling pathway (GO:0060070), cell migration (GO:0016477), transcription from RNA polymerase II promoter (GO:0006366) | | canonical Wnt signaling pathway (GO:0060070), cell migration (GO:0016477), transcription from RNA polymerase II promoter (GO:0006366) | ||
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Revision as of 20:13, 28 December 2017
| Curator | Broad Category | Pathway | Noctua Model Title | Genes | GO Term(s), IDs | Module(s) | Noctua Model URL | Model Status | To Do |
|---|---|---|---|---|---|---|---|---|---|
| Kimberly | Apoptosis | Apoptotic process involved in development - C. elegans NSM sister cell death | http://noctua.berkeleybop.org/editor/graph/gomodel:5745387b00001432 | Development | |||||
| Kimberly | Axon regeneration | Rac module; upstream of JNK-MAPK | C. elegans regulation of axon regeneration | http://noctua.berkeleybop.org/editor/graph/gomodel:591f58ab00000003 | Development | ||||
| Kimberly | Dosage Compensation | C. elegans X chromosome dosage compensation | http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000147 | Development | |||||
| EGF Signaling | |||||||||
| FGF Signaling | |||||||||
| Kimberly | Distal tip cell migration | Glycosylation | The directed migration of gonadal distal tip cells in Caenorhabditis elegans requires NGAT-1, a ß1,4-N-acetylgalactosaminyltransferase enzyme | http://noctua.berkeleybop.org/editor/graph/gomodel:5993df9e00000138 | Development | ||||
| Kimberly | Dauer | GPCR Signaling | Two chemoreceptors mediate developmental effects of dauer pheromone in C. elegans. | http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000454 | Development | ||||
| Jae, Jane, Kimberly | Egg laying | GPCR Signaling | GRK-2 egg laying regulation JM | http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000287 | Development | Finish up annotations for other genes in the paper | |||
| Kimberly | Innate immune response | GPCR Signaling | The DAF-16/FOXO transcription factor functions as a regulator of epidermal innate immunity. | http://noctua.berkeleybop.org/editor/graph/gomodel:5993df9e00000158 | Development | ||||
| Kimberly | Innate immune response | GPCR Signaling and MAPK signaling | C_elegans_defense_response_to_fungus | http://noctua.berkeleybop.org/editor/graph/gomodel:564622cc00000003 | Development | ||||
| Kimberly | Heterochronic pathway | Control of C. elegans larval developmental timing - the heterochronic pathway | http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000246 | Development | |||||
| Kimberly | Insulin Signaling | Signaling - C. elegans insulin receptor signaling | http://noctua.berkeleybop.org/editor/graph/gomodel:5667fdd400000696 | Development | |||||
| Kimberly | Germ line stem cell maintenance | Notch Signaling | C. elegans germline stem cell maintenance - Notch pathway | Notch signaling pathway (GO:0007219), positive regulation of stem cell population maintenance (GO:1902459), positive regulation of stem cell proliferation (GO:2000648) | http://noctua.berkeleybop.org/editor/graph/gomodel:5745387b00001750 | Development | |||
| Kimberly | Neuronal morphogenesis - AFD thermosensory neuron | Receptor guanylyl cyclase | Cellular Component Organization or Biogenesis - C. elegans Glial Control of Neuron Receptor Ending Shape | http://noctua.berkeleybop.org/editor/graph/gomodel:5716c41300000192 | Development | ||||
| Kimberly | Olfactory behavior | Developmental programming modulates olfactory behavior in C. elegans via endogenous RNAi pathways. (PMID:27351255) | http://noctua.berkeleybop.org/editor/graph/gomodel:59237a3c00000026 | Development | |||||
| Kimberly | Striated muscle mitochondrial patterning | Receptor tyrosine phosphatase | The secreted MSP domain of C. elegans VAPB homolog VPR-1 patterns the adult striated muscle mitochondrial reticulum via SMN-1 | http://noctua.berkeleybop.org/editor/graph/gomodel:5970219a00000566 | Development | ||||
| Kimberly | Germ line stem cell maintenance | TGFbeta Signaling | Linking the environment, DAF-7/TGFβ signaling and LAG-2/DSL ligand expression in the germline stem cell niche | http://noctua.berkeleybop.org/editor/graph/gomodel:59bee34700000074 | Development | ||||
| Kimberly | DA/DB motor neuron axon outgrowth | Wnt Signaling | The ENU-3 protein family members function in the Wnt pathway parallel to UNC-6/Netrin to promote motor neuron axon outgrowth in C. elegans. | http://noctua.berkeleybop.org/editor/graph/gomodel:598826eb00000296 | Development | ||||
| Chris | Q neuroblast descendant migration | Wnt Signaling | Canonical Wnt signaling in C. elegans - QL neuroblast descendant migration | canonical Wnt signaling pathway (GO:0060070), cell migration (GO:0016477), transcription from RNA polymerase II promoter (GO:0006366) | http://noctua.berkeleybop.org/editor/graph/gomodel:595a9ee700000584 | Development |
