New Model Implementation Checklist

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Revision as of 19:39, 22 January 2014 by Vanaukenk (talk | contribs)
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Files Needed for Implementing New GO Annotation Model

  • ?GO_code
    • We needed seven new GO codes to incorporate PAINT and other external annotations.
    • Status: file created, not yet checked in ACeDB
  • ?Database
    • Needed a Database object for Gene Ontology Consortium for GO_REFs
    • Status: file created, not yet check in ACeDB
  • New ?Species objects
    • May need new ?Species objects for dual-taxon annotations (e.g., GO:0050829, defense response to Gram negative bacterium)
    • Checked this column in the GAF. We have three taxon IDs, all more specific than the current WB taxon ID, since the GO annotations refer to a specific strain of these bacteria. Each species, and a sample PMID, are listed below:
      • taxon:273526 Serratia marcescens subsp. marcescens Db11 (PMID:12176330)
      • taxon:652611 Pseudomonas aeruginosa PA14 (PMID:12142542)
      • taxon:474186 Enterococcus faecalis OG1RF (PMID:12142542)
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