Difference between revisions of "New Model Implementation Checklist"
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*New ?Species objects | *New ?Species objects | ||
**May need new ?Species objects for dual-taxon annotations (e.g., GO:0050829, defense response to Gram negative bacterium) | **May need new ?Species objects for dual-taxon annotations (e.g., GO:0050829, defense response to Gram negative bacterium) | ||
| − | ** | + | **Checked this column in the GAF. We have three taxon IDs, all more specific than the current WB taxon ID, since the GO annotations refer to a specific strain of these bacteria. Each species, and a sample PMID, are listed below: |
| + | ***taxon:273526 Serratia marcescens subsp. marcescens Db11 (PMID:12176330) | ||
| + | ***taxon:652611 Pseudomonas aeruginosa PA14 (PMID:12142542) | ||
| + | ***taxon:474186 Enterococcus faecalis OG1RF (PMID:12142542) | ||
Revision as of 19:39, 22 January 2014
Files Needed for Implementing New GO Annotation Model
- ?GO_code
- We needed seven new GO codes to incorporate PAINT and other external annotations.
- Status: file created, not yet checked in ACeDB
- ?Database
- Needed a Database object for Gene Ontology Consortium for GO_REFs
- Status: file created, not yet check in ACeDB
- New ?Species objects
- May need new ?Species objects for dual-taxon annotations (e.g., GO:0050829, defense response to Gram negative bacterium)
- Checked this column in the GAF. We have three taxon IDs, all more specific than the current WB taxon ID, since the GO annotations refer to a specific strain of these bacteria. Each species, and a sample PMID, are listed below:
- taxon:273526 Serratia marcescens subsp. marcescens Db11 (PMID:12176330)
- taxon:652611 Pseudomonas aeruginosa PA14 (PMID:12142542)
- taxon:474186 Enterococcus faecalis OG1RF (PMID:12142542)
